Download MendeleyCrystal Structure of human Zeta-Crystallin at 1.85A
Debreczeni, J., Berridge, G., Kavanagh, K., Colbrook, S., Bray, J., Williams, L., Oppermann, U., Sundstrom, M., Arrowsmith, C., Edwards, A., Gileadi, O., von Delft, F.To be published.
1YB5
Crystal structure of human Zeta-Crystallin with bound NADP
- PDB DOI: 10.2210/pdb1YB5/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2004-12-20 Released: 2004-12-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.207
- R-Value Work: 0.170
- R-Value Observed: 0.171
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Quinone oxidoreductase | A, B | 351 | Homo sapiens | Mutation(s): 0 Gene Names: CRYZ EC: 1.6.5.5 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q08257 (Homo sapiens) Explore Q08257 Go to UniProtKB: Q08257 | |||||
PHAROS: Q08257 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q08257 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAP Query on NAP | G [auth A], N [auth B] | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C21 H28 N7 O17 P3 XJLXINKUBYWONI-NNYOXOHSSA-N |  | Ligand Interaction | |
| GOL Query on GOL | H [auth A], I [auth A], J [auth A], O [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| ACT Query on ACT | C [auth A], D [auth A], K [auth B] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | Ligand Interaction | |
| CL Query on CL | E [auth A], F [auth A], L [auth B], M [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.207
- R-Value Work: 0.170
- R-Value Observed: 0.171
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 99.484 | α = 90 |
| b = 110.239 | β = 90 |
| c = 77.253 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| CrystalClear | data reduction |
| CCP4 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Deposited Date: 2004-12-20
- Released Date: 2004-12-28 Deposition Author(s): Debreczeni, J., Berridge, G., Kavanagh, K., Colbrook, S., Bray, J., Williams, L., Oppermann, U., Sundstrom, M., Arrowsmith, C., Edwards, A., Gileadi, O., von Delft, F., Structural Genomics Consortium (SGC)
Revision History (Full details and data files)
- Version 1.0: 2004-12-28
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Advisory, Version format compliance
