1YB1

Crystal structure of human 17-beta-hydroxysteroid dehydrogenase type XI


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.192 
  • R-Value Work: 0.162 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Crystal structure of human 17-beta-hydroxysteroid dehydrogenase type XI.

Lukacik, P.Bunkoczi, G.Kavanagh, K.Ng, S.von Delft, F.Bray, J.Edwards, A.Arrowsmith, C.Sundstrom, M.Oppermann, U.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
17-beta-hydroxysteroid dehydrogenase type XI
A, B
272Homo sapiensMutation(s): 0 
Gene Names: HSD17B11 (DHRS8, PAN1B, SDR16C2)
EC: 1.1.1.62
Find proteins for Q8NBQ5 (Homo sapiens)
Go to Gene View: HSD17B11
Go to UniProtKB:  Q8NBQ5
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A, B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
AOI
Query on AOI

Download SDF File 
Download CCD File 
A, B
Androsterone
(3alpha,5beta,8alpha,10alpha,13alpha,14beta)-3-hydroxyandrostan-17-one
C19 H30 O2
QGXBDMJGAMFCBF-HLUDHZFRSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.192 
  • R-Value Work: 0.162 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 110.939α = 90.00
b = 110.939β = 90.00
c = 118.013γ = 90.00
Software Package:
Software NamePurpose
MOSFLMdata reduction
REFMACrefinement
CCP4data scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2004-12-28
    Type: Initial release
  • Version 1.1: 2008-04-30
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Advisory, Version format compliance
  • Version 1.3: 2013-07-03
    Type: Non-polymer description
  • Version 1.4: 2018-01-31
    Type: Database references, Structure summary