1XSF

Solution structure of a resuscitation promoting factor domain from Mycobacterium tuberculosis

• PDB DOI:  https://doi.org/10.2210/pdb1XSF/pdb
• BMRB: 6221

• Classification: CELL CYCLE, HYDROLASE
• Organism(s): Mycobacterium tuberculosis
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2004-10-19 Released: 2005-02-15 
• Deposition Author(s): Cohen-Gonsaud, M., Barthe, P., Henderson, B., Ward, J., Roumestand, C., Keep, N.H.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 30 
• Conformers Submitted: 30 
• Selection Criteria: all calculated structures submitted 

Literature

The structure of a resuscitation-promoting factor domain from Mycobacterium tuberculosis shows homology to lysozymes

Cohen-Gonsaud, M., Barthe, P., Bagneris, C., Henderson, B., Ward, J., Roumestand, C., Keep, N.H.

(2005) Nat Struct Mol Biol 12: 270-273

• PubMed: 15723078 
• DOI: https://doi.org/10.1038/nsmb905
• Primary Citation of Related Structures:  
  1XSF


• PubMed Abstract: 
  

Resuscitation-promoting factor (RPF) proteins reactivate stationary-phase cultures of (G+C)-rich Gram-positive bacteria including the causative agent of tuberculosis, Mycobacterium tuberculosis. We report the solution structure of the RPF domain from M. tuberculosis Rv1009 (RpfB) solved by heteronuclear multidimensional NMR. Structural homology with various glycoside hydrolases suggested that RpfB cleaved oligosaccharides. Biochemical studies indicate that a conserved active site glutamate is important for resuscitation activity. These data, as well as the presence of a clear binding pocket for a large molecule, indicate that oligosaccharide cleavage is probably the signal for revival from dormancy.

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Related Citations: 

• Letter to the Editor: (1)H, (15)N, and (13)C chemical shift assignments of the resuscitation promoting factor domain of Rv1009 from Mycobacterium tuberculosis
  Cohen-Gonsaud, M., Barthe, P., Pommier, F., Harris, R., Driscoll, P.C., Keep, N.H., Roumestand, C.
  (2004) J Biomol NMR 30: 373

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Organizational Affiliation: 

School of Crystallography and Institute for Structural Molecular Biology, Birkbeck College, University of London, Malet Street, London, WC1E 7HX, UK.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 11.36 kDa 
• Atom Count: 802 
• Modelled Residue Count: 108 
• Deposited Residue Count: 108 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable resuscitation-promoting factor rpfB	A	108	Mycobacterium tuberculosis	Mutation(s): 0  Gene Names: Rv1009 EC: 3
UniProt
Find proteins for P9WG29 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore P9WG29  Go to UniProtKB:  P9WG29

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 30 
• Conformers Submitted: 30 
• Selection Criteria: all calculated structures submitted 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-02-15 
Deposition Author(s): Cohen-Gonsaud, M., Barthe, P., Henderson, B., Ward, J., Roumestand, C., Keep, N.H.

Revision History  

• Version 1.0: 2005-02-15
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-02
  Changes: Data collection, Database references, Derived calculations