1X0U | pdb_00001x0u

Crystal Structure of the carboxyl transferase subunit of putative PCC of Sulfolobus tokodaii

• PDB DOI: https://doi.org/10.2210/pdb1X0U/pdb

• Classification: LYASE
• Organism(s): Sulfurisphaera tokodaii str. 7
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2005-03-29 Released: 2006-07-04 
• Deposition Author(s): Kakuta, Y., Sueda, S., Kondo, H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 
  0.271 (Depositor), 0.270 (DCC) 
• R-Value Work: 
  0.228 (Depositor), 0.230 (DCC) 
• R-Value Observed: 
  0.229 (Depositor) 

Literature

Crystal Structure of the carboxyl transferase subunit of putative PCC of Sulfolobus tokodaii

Kakuta, Y., Sueda, S., Kondo, H.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D3  (Explore in 3D)
Global Stoichiometry: Homo 6-mer - A6 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 343.74 kDa 
• Atom Count: 25,335 
• Modelled Residue Count: 3,108 
• Deposited Residue Count: 3,132 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
hypothetical methylmalonyl-CoA decarboxylase alpha subunit	A, B, C, D, E, F	522	Sulfurisphaera tokodaii str. 7	Mutation(s): 0  EC: 6.4.1.2 (UniProt), 6.4.1.3 (UniProt)
UniProt
Find proteins for F9VN45 (Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)) Explore F9VN45  Go to UniProtKB:  F9VN45

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free:  0.271 (Depositor), 0.270 (DCC) 
• R-Value Work:  0.228 (Depositor), 0.230 (DCC) 
• R-Value Observed: 0.229 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 99.61	α = 90
b = 181.471	β = 116.21
c = 112.7	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
SCALEPACK	data scaling
MOLREP	phasing
CNS	refinement
HKL-2000	data reduction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-07-04 
Deposition Author(s): Kakuta, Y., Sueda, S., Kondo, H.

Revision History  

• Version 1.0: 2006-07-04
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Source and taxonomy, Version format compliance
• Version 1.3: 2024-03-13
  Changes: Data collection, Database references