Download MendeleyCrystal Structure of type II malate/lactate dehydrogenase from thermus thermophilus HB8
Mizutani, H., Kunishima, N.To be published.
1X0A
Crystal Structure of type II malate/lactate dehydrogenase from thermus thermophilus HB8
- PDB DOI: 10.2210/pdb1X0A/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Thermus thermophilus HB8
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2005-03-16 Released: 2006-03-07
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.199
- R-Value Work: 0.184
- R-Value Observed: 0.184
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| malate/L-lactate dehydrogenase family protein | A | 344 | Thermus thermophilus HB8 | Mutation(s): 0 Gene Names: TTHB078 EC: 1.1.1.27 |  |
UniProt | |||||
Find proteins for Q53W84 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q53W84 Go to UniProtKB: Q53W84 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q53W84 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FMT Query on FMT | E [auth A] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | Ligand Interaction | |
| NA Query on NA | B [auth A], C [auth A], D [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.199
- R-Value Work: 0.184
- R-Value Observed: 0.184
- Space Group: I 21 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 163.25 | α = 90 |
| b = 163.25 | β = 90 |
| c = 163.25 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2006-03-07 Deposition Author(s): Mizutani, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2006-03-07
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance
