1WVI | pdb_00001wvi

Crystal structure of putative phosphatase from Streptococcus mutans UA159

• PDB DOI: https://doi.org/10.2210/pdb1WVI/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Streptococcus mutans UA159
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2004-12-15 Released: 2004-12-28 
• Deposition Author(s): Fedorov, A.A., Fedorov, E.V., Almo, S.C., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 
  0.264 (Depositor), 0.265 (DCC) 
• R-Value Work: 
  0.248 (Depositor), 0.248 (DCC) 
• R-Value Observed: 
  0.248 (Depositor) 

Literature

Crystal structure of putative phosphatase from Streptococcus mutans UA159

Fedorov, A.A., Fedorov, E.V., Almo, S.C.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 113.67 kDa 
• Atom Count: 7,840 
• Modeled Residue Count: 1,012 
• Deposited Residue Count: 1,028 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
putative phosphatases involved in N-acetyl-glucosamine catabolism	A, B, C, D	257	Streptococcus mutans UA159	Mutation(s): 0
UniProt
Find proteins for Q8DTD6 (Streptococcus mutans serotype c (strain ATCC 700610 / UA159)) Explore Q8DTD6  Go to UniProtKB:  Q8DTD6

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free:  0.264 (Depositor), 0.265 (DCC) 
• R-Value Work:  0.248 (Depositor), 0.248 (DCC) 
• R-Value Observed: 0.248 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.644	α = 90
b = 107.418	β = 97.4
c = 81.94	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing
CNS	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-12-28 
Deposition Author(s): Fedorov, A.A., Fedorov, E.V., Almo, S.C., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History  

• Version 1.0: 2004-12-28
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Source and taxonomy, Version format compliance
• Version 1.3: 2021-02-03
  Changes: Structure summary
• Version 1.4: 2024-03-13
  Changes: Data collection, Database references