1WPB

Structure of Escherichia coli yfbU gene product


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.227 
  • R-Value Work: 0.190 
  • R-Value Observed: 0.190 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal structure of Escherichia coli yfbU gene product

Borek, D.Chen, Y.Zheng, M.Skarina, T.Savchenko, A.Edwards, A.Otwinowski, Z.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
hypothetical protein yfbU
A, B, C, D, E, F, G, H
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
172Escherichia coliMutation(s): 0 
Gene Names: yfbU
Find proteins for Q1R9C1 (Escherichia coli (strain UTI89 / UPEC))
Explore Q1R9C1 
Go to UniProtKB:  Q1R9C1
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download Ideal Coordinates CCD File 
AC [auth L] , DB [auth H] , DC [auth M] , EA [auth C] , EB [auth H] , EC [auth M] , FA [auth C] , FB [auth H] , 
AC [auth L],  DB [auth H],  DC [auth M],  EA [auth C],  EB [auth H],  EC [auth M],  FA [auth C],  FB [auth H],  FC [auth M],  HC [auth N],  IC [auth N],  JA [auth D],  JC [auth N],  KA [auth D],  KB [auth I],  KC [auth N],  LA [auth D],  LB [auth I],  MA [auth D],  NC [auth O],  OC [auth O],  PA [auth E],  PB [auth J],  QA [auth E],  QB [auth J],  QC [auth P],  R [auth A],  RA [auth E],  RC [auth P],  S [auth A],  SA [auth E],  TB [auth K],  U [auth B],  UB [auth K],  V [auth B],  VB [auth K],  W [auth B],  WA [auth F],  WB [auth K],  X [auth B],  Y [auth B],  YA [auth G],  ZA [auth G],  ZB [auth L]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download Ideal Coordinates CCD File 
AA [auth C] , AB [auth H] , BA [auth C] , BB [auth H] , BC [auth M] , CA [auth C] , CB [auth H] , CC [auth M] , 
AA [auth C],  AB [auth H],  BA [auth C],  BB [auth H],  BC [auth M],  CA [auth C],  CB [auth H],  CC [auth M],  DA [auth C],  GA [auth D],  GB [auth I],  GC [auth N],  HA [auth D],  HB [auth I],  IA [auth D],  IB [auth I],  JB [auth I],  LC [auth O],  MB [auth J],  MC [auth O],  NA [auth E],  NB [auth J],  OA [auth E],  OB [auth J],  PC [auth P],  Q [auth A],  RB [auth K],  SB [auth K],  T [auth B],  TA [auth F],  UA [auth F],  VA [auth F],  XA [auth G],  XB [auth L],  YB [auth L],  Z [auth C]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.227 
  • R-Value Work: 0.190 
  • R-Value Observed: 0.190 
  • Space Group: P 2 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 230.521α = 90
b = 230.521β = 90
c = 230.521γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SHELXDphasing
REFMACrefinement

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2004-12-07
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Version format compliance