1WK1 | pdb_00001wk1

Solution structure of Lectin C-type domain derived from a hypothetical protein from C. elegans

PDB DOI: https://doi.org/10.2210/pdb1WK1/pdb
BMRB: 10035

Classification: SUGAR BINDING PROTEIN
Organism(s): Caenorhabditis elegans
Mutation(s): No

Deposited: 2004-05-29 Released: 2004-11-29
Deposition Author(s): Kobayashi, N., Koshiba, S., Inoue, M., Tochio, N., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, target function

wwPDB Validation 3D Report Full Report

Validation slider image for 1WK1

This is version 1.4 of the entry. See complete history.

Literature

Solution structure of Lectin C-type domain derived from a hypothetical protein from C. elegans

Kobayashi, N., Koshiba, S., Inoue, M., Tochio, N., Kigawa, T., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 16.42 kDa
Atom Count: 1,156
Modeled Residue Count: 150
Deposited Residue Count: 150
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein yk1067a12	A	150	Caenorhabditis elegans	Mutation(s): 0 Gene Names: NIG Kohara Sugano clone yk1067a12
UniProt
Find proteins for Q19853 (Caenorhabditis elegans) Explore Q19853 Go to UniProtKB: Q19853
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q19853
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, target function

Structure Validation

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Entry History

Deposition Data

Released Date: 2004-11-29

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2004-11-29
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2022-03-02
Changes: Data collection, Database references, Derived calculations
Version 1.4: 2024-11-13
Changes: Data collection, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.