1WGO | pdb_00001wgo

Solution structure of the PKD domain from human VPS10 domain-containing receptor SorCS2

PDB DOI: https://doi.org/10.2210/pdb1WGO/pdb

Classification: MEMBRANE PROTEIN
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2004-05-28 Released: 2004-11-28
Deposition Author(s): Chikayama, E., Kigawa, T., Tochio, N., Koshiba, S., Inoue, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, structures with the lowest energy, target function

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This is version 1.4 of the entry. See complete history.

Literature

Solution structure of the PKD domain from human VPS10 domain-containing receptor SorCS2

Chikayama, E., Kigawa, T., Tochio, N., Koshiba, S., Inoue, M., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 13.1 kDa
Atom Count: 918
Modeled Residue Count: 123
Deposited Residue Count: 123
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
VPS10 domain-containing receptor SorCS2	A	123	Homo sapiens	Mutation(s): 0 Gene Names: KAZUSA cDNA fh14788
UniProt & NIH Common Fund Data Resources
Find proteins for Q96PQ0 (Homo sapiens) Explore Q96PQ0 Go to UniProtKB: Q96PQ0
PHAROS: Q96PQ0 GTEx: ENSG00000184985
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q96PQ0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, structures with the lowest energy, target function

Structure Validation

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Entry History

Deposition Data

Released Date: 2004-11-28

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2004-11-28
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2022-03-02
Changes: Data collection, Database references, Derived calculations
Version 1.4: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.