1WG0 | pdb_00001wg0

Structural comparison of Nas6p protein structures in two different crystal forms

• PDB DOI: https://doi.org/10.2210/pdb1WG0/pdb

• Classification: PROTEIN BINDING
• Organism(s): Saccharomyces cerevisiae
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2004-05-27 Released: 2005-06-07 
• Deposition Author(s): Nakamura, Y., Umehara, T., Tanaka, A., Horikoshi, M., Yokoyama, S., Padmanabhan, B., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.53 Å
• R-Value Free: 
  0.250 (Depositor) 
• R-Value Work: 
  0.179 (Depositor) 
• R-Value Observed: 
  0.182 (Depositor) 

Starting Model: experimental

Literature

Structural comparison of Nas6p protein structures in two different crystal forms

Nakamura, Y., Umehara, T., Tanaka, A., Horikoshi, M., Yokoyama, S., Padmanabhan, B.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 27.39 kDa 
• Atom Count: 2,114 
• Modeled Residue Count: 243 
• Deposited Residue Count: 243 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable 26S proteasome regulatory subunit p28	A	243	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P50086 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P50086  Go to UniProtKB:  P50086

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.53 Å
• R-Value Free:  0.250 (Depositor) 
• R-Value Work:  0.179 (Depositor) 
• R-Value Observed: 0.182 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 43.444	α = 90
b = 68.629	β = 108.95
c = 46.985	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
SCALEPACK	data scaling
MOLREP	phasing
CNS	refinement
HKL-2000	data reduction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-06-07 
Deposition Author(s): Nakamura, Y., Umehara, T., Tanaka, A., Horikoshi, M., Yokoyama, S., Padmanabhan, B., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2005-06-07
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2023-10-25
  Changes: Data collection, Database references, Refinement description