1WFM | pdb_00001wfm

The first C2 domain of human synaptotagmin XIII

PDB DOI: https://doi.org/10.2210/pdb1WFM/pdb
BMRB: 10074

Classification: ENDOCYTOSIS/EXOCYTOSIS
Organism(s): Homo sapiens
Mutation(s): No
Membrane Protein: Yes OPM

Deposited: 2004-05-26 Released: 2004-11-26
Deposition Author(s): Nagashima, T., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, target function

wwPDB Validation 3D Report Full Report

Validation slider image for 1WFM

This is version 1.4 of the entry. See complete history.

Literature

The first C2 domain of human synaptotagmin XIII

Nagashima, T., Hayashi, F., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 14.75 kDa
Atom Count: 1,033
Modeled Residue Count: 138
Deposited Residue Count: 138
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
synaptotagmin XIII	A	138	Homo sapiens	Mutation(s): 0 Gene Names: Kazusa cDNA fh02770 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q7L8C5 (Homo sapiens) Explore Q7L8C5 Go to UniProtKB: Q7L8C5
PHAROS: Q7L8C5 GTEx: ENSG00000019505
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q7L8C5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, target function

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2004-11-26

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2004-11-26
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2022-03-02
Changes: Data collection, Database references, Derived calculations
Version 1.4: 2024-05-29
Changes: Data collection

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.