1WF9 | pdb_00001wf9

Solution structure of a novel beta-grasp fold like domain of Hypothetical protein (Arabidopsis thaliana)

PDB DOI: https://doi.org/10.2210/pdb1WF9/pdb
BMRB: 10130

Classification: Structural genomics, unknown function
Organism(s): Arabidopsis thaliana
Mutation(s): No

Deposited: 2004-05-26 Released: 2005-06-07
Deposition Author(s): Qin, X., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, structures with the lowest energy, target function

wwPDB Validation 3D Report Full Report

Validation slider image for 1WF9

This is version 1.4 of the entry. See complete history.

Literature

Solution structure of a novel beta-grasp fold like domain of Hypothetical protein (Arabidopsis thaliana)

Qin, X., Hayashi, F., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 11.52 kDa
Atom Count: 806
Modeled Residue Count: 107
Deposited Residue Count: 107
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NPL4 family protein	A	107	Arabidopsis thaliana	Mutation(s): 0 Gene Names: RIKEN RAFL09-18-B15
UniProt
Find proteins for Q9LYC2 (Arabidopsis thaliana) Explore Q9LYC2 Go to UniProtKB: Q9LYC2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9LYC2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, structures with the lowest energy, target function

Structure Validation

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Entry History

Deposition Data

Released Date: 2005-06-07

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2005-06-07
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2022-03-02
Changes: Data collection, Database references, Derived calculations
Version 1.4: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.