1W8G

CRYSTAL STRUCTURE OF E. COLI K-12 YGGS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.195 
  • R-Value Work: 0.161 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal Structure of E. Coli K-12 Yggs

Sulzenbacher, G.Gruez, A.Spinelli, S.Roig-Zamboni, V.Pagot, F.Bignon, C.Vincentelli, R.Cambillau, C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HYPOTHETICAL UPF0001 PROTEIN YGGS
A
234Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: yggS
Find proteins for P67080 (Escherichia coli (strain K12))
Go to UniProtKB:  P67080
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ICT
Query on ICT

Download SDF File 
Download CCD File 
A
ISOCITRIC ACID
C6 H8 O7
ODBLHEXUDAPZAU-ZAFYKAAXSA-N
 Ligand Interaction
PLP
Query on PLP

Download SDF File 
Download CCD File 
A
PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.195 
  • R-Value Work: 0.161 
  • Space Group: I 41 2 2
Unit Cell:
Length (Å)Angle (°)
a = 124.017α = 90.00
b = 124.017β = 90.00
c = 83.729γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
SCALAdata scaling
AMoREphasing
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-07-05
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Version format compliance