1VP7

Crystal structure of Exodeoxyribonuclease VII small subunit (NP_881400.1) from Bordetella pertussis at 2.40 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.203 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structure of Exodeoxyribonuclease VII small subunit E.C.3.1.11.6 (NP_881400.1) from Bordetella pertussis at 2.40 A resolution

Joint Center for Structural Genomics (JCSG)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
exodeoxyribonuclease VII small subunit
A, B, C, D, E, F
100Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)Mutation(s): 0 
Gene Names: xseB
EC: 3.1.11.6
Find proteins for Q7VV85 (Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251))
Go to UniProtKB:  Q7VV85
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D, E, F
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 107.030α = 90.00
b = 107.030β = 90.00
c = 207.260γ = 120.00
Software Package:
Software NamePurpose
autoSHARPphasing
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
SHELXmodel building
SHELXphasing
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2004-10-26
    Type: Initial release
  • Version 1.1: 2008-04-26
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Advisory, Version format compliance
  • Version 1.3: 2017-10-04
    Type: Refinement description