1VM1

STRUCTURE OF SHV-1 BETA-LACTAMASE INHIBITED BY TAZOBACTAM


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.171 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Inhibition of the SHV-1 beta-lactamase by sulfones: crystallographic observation of two reaction intermediates with tazobactam.

Kuzin, A.P.Nukaga, M.Nukaga, Y.Hujer, A.Bonomo, R.A.Knox, J.R.

(2001) Biochemistry 40: 1861-1866

  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Two species resulting from the reaction of the SHV-1 class A beta-lactamase with the sulfone inhibitor tazobactam have been trapped at 100 K and mapped by X-ray crystallography at 2.0 A resolution. An acyclic form of tazobactam is covalently bonded t ...

    Two species resulting from the reaction of the SHV-1 class A beta-lactamase with the sulfone inhibitor tazobactam have been trapped at 100 K and mapped by X-ray crystallography at 2.0 A resolution. An acyclic form of tazobactam is covalently bonded to the catalytic Ser70 side chain, and a second species, a five-atom vinyl carboxylic acid fragment of tazobactam, is bonded to Ser130. It is proposed that the electron density map of the crystal is a composite picture of two complexes, each with only a single bound species. It is estimated that the two complexes exist in the crystal in approximately equal populations. Results are discussed in relation to the mechanism-based inhibition of class A beta-lactamases by the similar inhibitors sulbactam and clavulanic acid.


    Related Citations: 
    • Structure of the SHV-1 Beta-Lactamase
      Kuzin, A.P.,Nukaga, M.,Nukaga, Y.,Hujer, A.M.,Bonomo, R.A.,Knox, J.R.
      (1999) Biochemistry 38: 5720


    Organizational Affiliation

    Department of Molecular and Cell Biology, The University of Connecticut, Storrs, CT 06269-3125, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
BETA-LACTAMASE SHV-1
A
265Klebsiella pneumoniaeMutation(s): 0 
Gene Names: bla (shv1)
EC: 3.5.2.6
Find proteins for P0AD64 (Klebsiella pneumoniae)
Go to UniProtKB:  P0AD64
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
TAZ
Query on TAZ

Download SDF File 
Download CCD File 
A
TAZOBACTAM
C10 H12 N4 O5 S
LPQZKKCYTLCDGQ-NRPADANISA-N
 Ligand Interaction
TBE
Query on TBE

Download SDF File 
Download CCD File 
A
TAZOBACTAM INTERMEDIATE
C10 H14 N4 O5 S
ANZZKUOZZHRUQC-AARLMMRRSA-N
 Ligand Interaction
AKR
Query on AKR

Download SDF File 
Download CCD File 
A
ACRYLIC ACID
C3 H4 O2
NIXOWILDQLNWCW-UHFFFAOYSA-N
 Ligand Interaction
MA4
Query on MA4

Download SDF File 
Download CCD File 
A
CYCLOHEXYL-HEXYL-BETA-D-MALTOSIDE
C24 H44 O11
WUCWJXGMSXTDAV-QKMCSOCLSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
TAZIC50: 30 - 222 nM (100) BINDINGDB
TAZKi: 220 nM (100) BINDINGDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.171 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 49.200α = 90.00
b = 56.100β = 90.00
c = 82.500γ = 90.00
Software Package:
Software NamePurpose
X-GENdata reduction
REFMACrefinement
X-GENdata scaling
AMoREphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2004-09-07
    Type: Initial release
  • Version 1.1: 2008-04-26
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2017-10-04
    Type: Refinement description