1VK5

X-ray Structure of Gene Product from Arabidopsis Thaliana At3g22680


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.604 Å
  • R-Value Free: 0.183 
  • R-Value Work: 0.160 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Structure at 1.6 A resolution of the protein from gene locus At3g22680 from Arabidopsis thaliana.

Allard, S.T.Bingman, C.A.Johnson, K.A.Wesenberg, G.E.Bitto, E.Jeon, W.B.Phillips, G.N.

(2005) Acta Crystallogr.,Sect.F 61: 647-650

  • DOI: 10.1107/S1744309105019743

  • PubMed Abstract: 
  • The gene product of At3g22680 from Arabidopsis thaliana codes for a protein of unknown function. The crystal structure of the At3g22680 gene product was determined by multiple-wavelength anomalous diffraction and refined to an R factor of 16.0% (Rfre ...

    The gene product of At3g22680 from Arabidopsis thaliana codes for a protein of unknown function. The crystal structure of the At3g22680 gene product was determined by multiple-wavelength anomalous diffraction and refined to an R factor of 16.0% (Rfree = 18.4%) at 1.60 A resolution. The refined structure shows one monomer in the asymmetric unit, with one molecule of the non-denaturing detergent CHAPS {3-[(3-cholamidopropyl)dimethylammonio]-1-propane sulfonate} tightly bound. Protein At3g22680 shows no structural homology to any other known proteins and represents a new fold in protein conformation space.


    Organizational Affiliation

    Center for Eukaryotic Structural Genomics, Department of Biochemistry, University of Wisconsin-Madison, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
expressed protein
A
157Arabidopsis thalianaMutation(s): 0 
Gene Names: RDM1
Find proteins for Q9LUJ3 (Arabidopsis thaliana)
Go to Gene View: RDM1
Go to UniProtKB:  Q9LUJ3
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
CPS
Query on CPS

Download SDF File 
Download CCD File 
A
3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE
CHAPS
C32 H58 N2 O7 S
UMCMPZBLKLEWAF-BCTGSCMUSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.604 Å
  • R-Value Free: 0.183 
  • R-Value Work: 0.160 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 83.450α = 90.00
b = 83.450β = 90.00
c = 60.575γ = 120.00
Software Package:
Software NamePurpose
ARP/wARPmodel building
DENZOdata reduction
REFMACrefinement
SCALEPACKdata scaling
SOLVEphasing
RESOLVEphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2004-05-18
    Type: Initial release
  • Version 1.1: 2008-02-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Derived calculations, Version format compliance
  • Version 1.3: 2017-10-04
    Type: Refinement description