1VC3

Crystal Structure of L-Aspartate-alpha-Decarboxylase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.215 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal Structure of L-Aspartate-alpha-Decarboxylase

Goto, M.Omi, R.Nakajima, O.Miyahara, I.Hirotsu, K.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
L-Aspartate-alpha-Decarboxylase light chain
A
24Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: panD
EC: 4.1.1.11
Find proteins for Q5SKN7 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SKN7
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
L-Aspartate-alpha-Decarboxylase heavy chain
B
96Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: panD
EC: 4.1.1.11
Find proteins for Q5SKN7 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SKN7
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
PYR
Query on PYR
B
NON-POLYMERC3 H4 O3

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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.215 
  • Space Group: I 4
Unit Cell:
Length (Å)Angle (°)
a = 67.530α = 90.00
b = 67.530β = 90.00
c = 47.800γ = 90.00
Software Package:
Software NamePurpose
AMoREphasing
CNSrefinement
HKL-2000data collection
SCALEPACKdata scaling
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2005-06-28
    Type: Initial release
  • Version 1.1: 2008-04-27
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Derived calculations, Version format compliance