1VAY | pdb_00001vay

Crystal Structure of Uricase from Arthrobacter globiformis with inhibitor 8-azaxanthine

PDB DOI: https://doi.org/10.2210/pdb1VAY/pdb

Classification: OXIDOREDUCTASE
Organism(s): Arthrobacter globiformis
Mutation(s): No

Deposited: 2004-02-19 Released: 2005-06-28
Deposition Author(s): Hossain, M.T., Suzuki, K., Yamamoto, T., Imamura, S., Sekiguchi, T., Takenaka, A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.24 Å
R-Value Free:
0.242 (Depositor)
R-Value Work:
0.197 (Depositor)
R-Value Observed:
0.197 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal Structure of Uricase from Arthrobacter Globiformis Complexed with an inhibitor 8-Azaxanthine

Hossain, M.T., Juan, E.C.M., Suzuki, K., Yamamoto, T., Imamura, S., Sekiguchi, T., Takenaka, A.

To be published.

Macromolecule Content

Total Structure Weight: 260.89 kDa
Atom Count: 19,410
Modeled Residue Count: 2,296
Deposited Residue Count: 2,296
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uric acid oxidase	A, B, C, D, E A, B, C, D, E, F, G, H	287	Arthrobacter globiformis	Mutation(s): 0 EC: 1.7.3.3

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
AZA Query on AZA Download:Ideal Coordinates CCD File SDF format, chain I [auth A] SDF format, chain J [auth B] SDF format, chain K [auth B] SDF format, chain L [auth D] SDF format, chain M [auth E] SDF format, chain N [auth F] SDF format, chain O [auth G] SDF format, chain P [auth H] MOL2 format, chain I [auth A] MOL2 format, chain J [auth B] MOL2 format, chain K [auth B] MOL2 format, chain L [auth D] MOL2 format, chain M [auth E] MOL2 format, chain N [auth F] MOL2 format, chain O [auth G] MOL2 format, chain P [auth H] mmCIF format, chain I [auth A] mmCIF format, chain J [auth B] mmCIF format, chain K [auth B] mmCIF format, chain L [auth D] mmCIF format, chain M [auth E] mmCIF format, chain N [auth F] mmCIF format, chain O [auth G] mmCIF format, chain P [auth H]	I [auth A] J [auth B] K [auth B] L [auth D] M [auth E] I [auth A], J [auth B], K [auth B], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	8-AZAXANTHINE C₄ H₃ N₅ O₂ KVGVQTOQSNJTJI-UHFFFAOYSA-N		Interactions Focus chain I [auth A] Focus chain J [auth B] Focus chain K [auth B] Focus chain L [auth D] Focus chain M [auth E] Focus chain N [auth F] Focus chain O [auth G] Focus chain P [auth H]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.24 Å
R-Value Free: 0.242 (Depositor)
R-Value Work: 0.197 (Depositor)
R-Value Observed: 0.197 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.33	α = 90
b = 122.28	β = 90
c = 283.92	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
AMoRE	phasing
CNS	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2005-06-28

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2005-06-28
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2023-10-25
Changes: Data collection, Database references, Derived calculations, Refinement description