1VAY | pdb_00001vay

Crystal Structure of Uricase from Arthrobacter globiformis with inhibitor 8-azaxanthine

• PDB DOI: https://doi.org/10.2210/pdb1VAY/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Arthrobacter globiformis
• Mutation(s): No 


• Deposited: 2004-02-19 Released: 2005-06-28 
• Deposition Author(s): Hossain, M.T., Suzuki, K., Yamamoto, T., Imamura, S., Sekiguchi, T., Takenaka, A.

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.24 Å
• R-Value Free: 
  0.242 (Depositor) 
• R-Value Work: 
  0.197 (Depositor) 
• R-Value Observed: 
  0.197 (Depositor) 

Starting Model: experimental

Literature

Crystal Structure of Uricase from Arthrobacter Globiformis Complexed with an inhibitor 8-Azaxanthine

Hossain, M.T., Juan, E.C.M., Suzuki, K., Yamamoto, T., Imamura, S., Sekiguchi, T., Takenaka, A.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 260.89 kDa 
• Atom Count: 19,410 
• Modeled Residue Count: 2,296 
• Deposited Residue Count: 2,296 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uric acid oxidase	A, B, C, D, E, F, G, H	287	Arthrobacter globiformis	Mutation(s): 0  EC: 1.7.3.3

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
AZA	I [auth A], J [auth B], K [auth B], L [auth D], M [auth E], N [auth F], O [auth G], P [auth H]	8-AZAXANTHINE C4 H3 N5 O2 KVGVQTOQSNJTJI-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.24 Å
• R-Value Free:  0.242 (Depositor) 
• R-Value Work:  0.197 (Depositor) 
• R-Value Observed: 0.197 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.33	α = 90
b = 122.28	β = 90
c = 283.92	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
AMoRE	phasing
CNS	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-06-28 
Deposition Author(s): Hossain, M.T., Suzuki, K., Yamamoto, T., Imamura, S., Sekiguchi, T., Takenaka, A.

Revision History  

• Version 1.0: 2005-06-28
  Type: Initial release
  
• Version 1.1: 2008-04-27
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2023-10-25
  Changes: Data collection, Database references, Derived calculations, Refinement description