1V6Z | pdb_00001v6z

Crystal structure of TT1573 from Thermus thermophilus

• PDB DOI: https://doi.org/10.2210/pdb1V6Z/pdb

• Classification: TRANSFERASE
• Organism(s): Thermus thermophilus HB8
• Mutation(s): Yes 


• Deposited: 2003-12-05 Released: 2004-12-14 
• Deposition Author(s): Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.246 (Depositor) 
• R-Value Work: 
  0.197 (Depositor) 

Literature

Crystal structure of TT1573 from Thermus thermophilus

Murayama, K., Shirouzu, M., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 49.61 kDa 
• Atom Count: 3,941 
• Modeled Residue Count: 452 
• Deposited Residue Count: 456 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
hypothetical protein TTHA0657	A, B	228	Thermus thermophilus HB8	Mutation(s): 2  EC: 2.1.1.193
UniProt
Find proteins for Q5SKI6 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SKI6  Go to UniProtKB:  Q5SKI6

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.246 (Depositor) 
• R-Value Work:  0.197 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 54.406	α = 90
b = 78.506	β = 114.43
c = 54.871	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
SOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-12-14 
Deposition Author(s): Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2004-12-14
  Type: Initial release
  
• Version 1.1: 2008-04-27
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2018-08-01
  Changes: Data collection, Database references
• Version 1.4: 2019-12-25
  Changes: Data collection, Database references, Derived calculations
• Version 1.5: 2023-12-27
  Changes: Data collection, Database references
• Version 1.6: 2024-10-30
  Changes: Structure summary