1V5N

Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana

• PDB DOI: https://doi.org/10.2210/pdb1V5N/pdb
• BMRB: 10108

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Arabidopsis thaliana
• Mutation(s): No 


• Deposited: 2003-11-25 Released: 2004-05-25 
• Deposition Author(s): Miyamoto, K., Tomizawa, T., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the least restraint violations, structures with the lowest energy, target function 

Literature

Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana

Miyamoto, K., Tomizawa, T., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 10.26 kDa 
• Atom Count: 709 
• Modelled Residue Count: 89 
• Deposited Residue Count: 89 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PDI-like Hypothetical Protein At1g60420	A	89	Arabidopsis thaliana	Mutation(s): 0  Gene Names: RIKEN cDNA RAFL09-40-E23
UniProt
Find proteins for O80763 (Arabidopsis thaliana) Explore O80763  Go to UniProtKB:  O80763

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the least restraint violations, structures with the lowest energy, target function 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-05-25 
Deposition Author(s): Miyamoto, K., Tomizawa, T., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2004-05-25
  Type: Initial release
  
• Version 1.1: 2008-04-27
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-02
  Changes: Data collection, Database references, Derived calculations
• Version 1.4: 2023-12-27
  Changes: Data collection