Macromolecule Content

Total Structure Weight: 94.75 kDa
Atom Count: 6,539
Modelled Residue Count: 802
Deposited Residue Count: 843
Unique protein chains: 1

1V4N

Structure of 5'-deoxy-5'-methylthioadenosine phosphorylase homologue from Sulfolobus tokodaii

PDB DOI: https://doi.org/10.2210/pdb1V4N/pdb

Classification: TRANSFERASE
Organism(s): Sulfurisphaera tokodaii
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2003-11-14 Released: 2005-01-04
Deposition Author(s): Kitago, Y., Yasutake, Y., Sakai, N., Tsujimura, M., Yao, M., Watanabe, N., Kawarabayasi, Y., Tanaka, I.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free: 0.241
R-Value Work: 0.190

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of Sulfolobus tokodaii MTAP

Kitago, Y., Yasutake, Y., Sakai, N., Tsujimura, M., Yao, M., Watanabe, N., Kawarabayasi, Y., Tanaka, I.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
271aa long hypothetical 5'-methylthioadenosine phosphorylase	A, B, C	281	Sulfurisphaera tokodaii	Mutation(s): 0 Gene Names: ST0485 EC: 2.4.2.28
UniProt
Find proteins for F9VN03 (Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)) Explore F9VN03 Go to UniProtKB: F9VN03
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	F9VN03
Protein Feature View Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free: 0.241
R-Value Work: 0.190
Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 79.869	α = 90
b = 142.888	β = 90
c = 169.564	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
AMoRE	phasing
CNS	refinement

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2005-01-04

Deposition Author(s):

Kawarabayasi, Y.

Revision History (Full details and data files)

Version 1.0: 2005-01-04
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.