Download MendeleyCrystal structure of acylphosphatase from hyperthermophilic archaeon Pyrococcus horikoshii OT3
Miyazono, K., Sawano, Y., Tanokura, M.(2004) Proc Jpn Acad Ser B Phys Biol Sci 80: 439-442
1V3Z
Crystal Structure of Acylphosphatase from Pyrococcus horikoshii
- PDB DOI: https://doi.org/10.2210/pdb1V3Z/pdb
- Classification: HYDROLASE
- Organism(s): Pyrococcus horikoshii
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2003-11-07 Released: 2004-11-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.72 Å
- R-Value Free: 0.190
- R-Value Work: 0.168
- R-Value Observed: 0.169
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Acylphosphatase | 91 | Pyrococcus horikoshii | Mutation(s): 0 EC: 3.6.1.7 |  | |
UniProt | |||||
Find proteins for P84142 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Explore P84142 Go to UniProtKB: P84142 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P84142 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| K Query on K | C [auth A], E [auth B] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
| CL Query on CL | D [auth A], F [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.72 Å
- R-Value Free: 0.190
- R-Value Work: 0.168
- R-Value Observed: 0.169
- Space Group: P 32 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 86.065 | α = 90 |
| b = 86.065 | β = 90 |
| c = 75.355 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2004-11-30 Deposition Author(s): Miyazono, K., Tanokura, M.
Revision History (Full details and data files)
- Version 1.0: 2004-11-30
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2023-12-27
Changes: Data collection, Database references, Derived calculations
