1UZ5 | pdb_00001uz5

The Crystal Structure of molybdopterin biosynthesis moea protein from Pyrococcus horikosii

• PDB DOI: https://doi.org/10.2210/pdb1UZ5/pdb

• Classification: MOLYBDOPTERIN BIOSYNTHESIS
• Organism(s): Pyrococcus horikoshii OT3
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2004-03-05 Released: 2004-03-10 
• Deposition Author(s): Takahashi, H., Tahirov, T.H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.05 Å
• R-Value Free: 
  0.247 (Depositor) 
• R-Value Work: 
  0.218 (Depositor), 0.211 (DCC) 
• R-Value Observed: 
  0.218 (Depositor) 

Literature

The Crystal Structure of Molybdopterin Biosynthesis Moeaprotein from Pyrococcus Horikosii

Takahashi, H., Miyano, M., Tahirov, T.H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PQS (software)

Macromolecule Content 

• Total Structure Weight: 43.43 kDa 
• Atom Count: 3,195 
• Modeled Residue Count: 391 
• Deposited Residue Count: 402 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
402AA LONG HYPOTHETICAL MOLYBDOPTERIN BIOSYNTHESIS MOEA PROTEIN	A	402	Pyrococcus horikoshii OT3	Mutation(s): 0  EC: 2.10.1.1
UniProt
Find proteins for O58335 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Explore O58335  Go to UniProtKB:  O58335

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	B [auth A], C [auth A], D [auth A], E [auth A], F [auth A], G [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.05 Å
• R-Value Free:  0.247 (Depositor) 
• R-Value Work:  0.218 (Depositor), 0.211 (DCC) 
• R-Value Observed: 0.218 (Depositor) 

Space Group: P 6₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 181.375	α = 90
b = 181.375	β = 90
c = 71.311	γ = 120

Software Package:

Software Name	Purpose
CNS	refinement
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-03-10 
Deposition Author(s): Takahashi, H., Tahirov, T.H.

Revision History  

• Version 1.0: 2004-03-10
  Type: Initial release
  
• Version 1.1: 2011-05-07
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2024-05-08
  Changes: Data collection, Database references, Other