1URR

A novel Drosophila Melanogaster Acylphosphatase (AcPDro2)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.160 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Three-Dimensional Structural Characterization of a Novel Drosophila Melanogaster Acylphosphatase

Zuccotti, S.Rosano, C.Ramazzotti, M.Degl'Innocenti, D.Stefani, M.Manao, G.Bolognesi, M.

(2004) Acta Crystallogr.,Sect.D 60: 1177

  • DOI: 10.1107/S0907444904006808

  • PubMed Abstract: 
  • Analysis of the Drosophila melanogaster EST database led to the discovery and cloning of a novel acylphosphatase. The CG18505 gene coding for a new enzyme (AcPDro2) is clearly distinct from the previously described CG16870Acyp gene, which also codes ...

    Analysis of the Drosophila melanogaster EST database led to the discovery and cloning of a novel acylphosphatase. The CG18505 gene coding for a new enzyme (AcPDro2) is clearly distinct from the previously described CG16870Acyp gene, which also codes for a D. melanogaster acylphosphatase (AcPDro). The putative catalytic residues, together with residues held to stabilize the acylphosphatase fold, are conserved in the two encoded proteins. Crystals of AcPDro2, which belong to the trigonal space group P3(1)21, with unit-cell parameters a = b = 45.8, c = 98.6 angstroms, gamma = 120 degrees, allowed the solution of the protein structure by molecular replacement and its refinement to 1.5 angstroms resolution. The AcPDro2 active-site structure is discussed.


    Related Citations: 
    • Characterization of a Novel Drosophila Melanogaster Acylphosphatase
      Degl'Innocenti, D.,Ramazzotti, M.,Marzocchini, R.,Chiti, F.,Raugei, G.
      (2003) FEBS Lett. 513: 171


    Organizational Affiliation

    Department of Physics-INFM and Center of Excellence for Biomedical Research, University of Genova, Via Dodecaneso 33, 16132 Genova, Italy.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
CG18505 PROTEIN
A
102Drosophila melanogasterMutation(s): 0 
Gene Names: Acyp2
EC: 3.6.1.7
Find proteins for Q9VF36 (Drosophila melanogaster)
Go to UniProtKB:  Q9VF36
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.160 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 45.722α = 90.00
b = 45.722β = 90.00
c = 98.585γ = 120.00
Software Package:
Software NamePurpose
MOSFLMdata reduction
AMoREphasing
REFMACrefinement
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2004-05-27
    Type: Initial release
  • Version 1.1: 2014-02-19
    Type: Database references, Derived calculations, Non-polymer description, Other, Structure summary, Version format compliance