1UPS

GlcNAc[alpha]1-4Gal releasing endo-[beta]-galactosidase from Clostridium perfringens


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 0.204 
  • R-Value Work: 0.176 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Three-dimensional structure of GlcNAcalpha1-4Gal releasing endo-beta-galactosidase from Clostridium perfringens.

Tempel, W.Liu, Z.J.Horanyi, P.S.Deng, L.Lee, D.Newton, M.G.Rose, J.P.Ashida, H.Li, S.C.Li, Y.T.Wang, B.C.

(2005) Proteins 59: 141-144


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
GLCNAC-ALPHA-1,4-GAL-RELEASING ENDO-BETA-GALACTOSIDASE
A, B
420Clostridium perfringensMutation(s): 0 
Gene Names: gngC
Find proteins for Q934G8 (Clostridium perfringens)
Go to UniProtKB:  Q934G8
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A, B
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 0.204 
  • R-Value Work: 0.176 
  • Space Group: P 63
Unit Cell:
Length (Å)Angle (°)
a = 160.430α = 90.00
b = 160.430β = 90.00
c = 86.140γ = 120.00
Software Package:
Software NamePurpose
DENZOdata reduction
SOLVE/RESOLVEphasing
REFMACrefinement
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2004-11-25
    Type: Initial release
  • Version 1.1: 2018-06-13
    Type: Data collection, Database references, Refinement description
  • Version 1.2: 2019-08-21
    Type: Data collection, Database references