1UJ8 | pdb_00001uj8

Structures of ORF3 in Two Crystal Forms, a Member of Isc Machinery of E. coli Involved in the Assembly of Iron-Sulfur Clusters

PDB DOI: https://doi.org/10.2210/pdb1UJ8/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Escherichia coli
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2003-07-29 Released: 2005-02-15
Deposition Author(s): Shimomura, Y., Takahashi, Y., Fukuyama, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.75 Å
R-Value Free:
0.231 (Depositor), 0.222 (DCC)
R-Value Work:
0.194 (Depositor), 0.191 (DCC)

wwPDB Validation 3D Report Full Report

Validation slider image for 1UJ8

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of Escherichia coli YfhJ protein, a member of the ISC machinery involved in assembly of iron-sulfur clusters.

Shimomura, Y., Takahashi, Y., Kakuta, Y., Fukuyama, K.

(2005) Proteins 60: 566-569

PubMed: 15937904 Search on PubMed
DOI: https://doi.org/10.1002/prot.20481
Primary Citation Related Structures:
1UJ8

Organizational Affiliation

Department of Biology, Graduate School of Science, Osaka University, Osaka, Japan.

Macromolecule Content

Total Structure Weight: 9.01 kDa
Atom Count: 704
Modeled Residue Count: 73
Deposited Residue Count: 77
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein yfhJ	A	77	Escherichia coli	Mutation(s): 0
UniProt
Find proteins for P0C0L9 (Escherichia coli (strain K12)) Explore P0C0L9 Go to UniProtKB: P0C0L9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0C0L9
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.75 Å
R-Value Free: 0.231 (Depositor), 0.222 (DCC)
R-Value Work: 0.194 (Depositor), 0.191 (DCC)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 76.63	α = 90
b = 27.25	β = 111
c = 39.68	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
CNS	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2005-02-15

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2005-02-15
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2023-12-27
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.