1UFO | pdb_00001ufo

Crystal Structure of TT1662 from Thermus thermophilus

PDB DOI: https://doi.org/10.2210/pdb1UFO/pdb

Classification: HYDROLASE
Organism(s): Thermus thermophilus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2003-06-03 Released: 2003-12-03
Deposition Author(s): Murayama, K., Shirouzu, M., Terada, T., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free:
0.207 (Depositor)
R-Value Work:
0.170 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 1UFO

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of TT1662 from Thermus thermophilus HB8: a member of the alpha/beta hydrolase fold enzymes.

Murayama, K., Shirouzu, M., Terada, T., Kuramitsu, S., Yokoyama, S.

(2005) Proteins 58: 982-984

PubMed: 15648092 Search on PubMed
DOI: https://doi.org/10.1002/prot.20361
Primary Citation Related Structures:
1UFO

Organizational Affiliation

RIKEN Genomic Sciences Center, Tsurumi, Yokohama, Japan.

Macromolecule Content

Total Structure Weight: 157.54 kDa
Atom Count: 12,988
Modeled Residue Count: 1,428
Deposited Residue Count: 1,428
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
hypothetical protein TT1662	A, B, C, D, E A, B, C, D, E, F	238	Thermus thermophilus	Mutation(s): 0
UniProt
Find proteins for P83821 (Thermus thermophilus) Explore P83821 Go to UniProtKB: P83821
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P83821
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D, E A, B, C, D, E, F	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free: 0.207 (Depositor)
R-Value Work: 0.170 (Depositor)

Space Group: P 3₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 129.857	α = 90
b = 129.857	β = 90
c = 70.119	γ = 120

Software Package:

Software Name	Purpose
CNS	refinement
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2003-12-03

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2003-12-03
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2023-12-27
Changes: Data collection, Database references, Derived calculations
Version 1.4: 2024-10-30
Changes: Structure summary

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.