Observing translesion synthesis of an aromatic amine DNA adduct by a high-fidelity DNA polymeraseHsu, G.W., Kiefer, J.R., Becherel, O.J., Fuchs, R.P.P., Beese, L.S.
(2004) J.Biol.Chem. 279: 50280-50285
- PubMed: 15385534
- DOI: 10.1074/jbc.M409224200
- Primary Citation of Related Structures:
- PubMed Abstract:
- Structures of Mismatch Replication Errors Observed in a DNA Polymerase
Johnson, S.J.,Beese, L.S.
(2004) Cell 116: 803
- Processive DNA synthesis observed in a polymerase crystal suggests a mechanism for the prevention of frameshift mutations
Johnson, S.J.,Taylor, J.S.,Beese, L.S.
(2003) Proc.Natl.Acad.Sci.USA 100: 3895
- Visualizing DNA replication in a catalytically active Bacillus DNA polymerase crystal
Kiefer, J.R.,Mao, C.,Braman, J.C.,Beese, L.S.
(1998) Nature 391: 304
Aromatic amines have been studied for more than a half-century as model carcinogens representing a class of chemicals that form bulky adducts to the C8 position of guanine in DNA. Among these guanine adducts, the N-(2'-deoxyguanosin-8-yl)-aminofluore ...
Aromatic amines have been studied for more than a half-century as model carcinogens representing a class of chemicals that form bulky adducts to the C8 position of guanine in DNA. Among these guanine adducts, the N-(2'-deoxyguanosin-8-yl)-aminofluorene (G-AF) and N-2-(2'-deoxyguanosin-8-yl)-acetylaminofluorene (G-AAF) derivatives are the best studied. Although G-AF and G-AAF differ by only an acetyl group, they exert different effects on DNA replication by replicative and high-fidelity DNA polymerases. Translesion synthesis of G-AF is achieved with high-fidelity polymerases, whereas replication of G-AAF requires specialized bypass polymerases. Here we have presented structures of G-AF as it undergoes one round of accurate replication by a high-fidelity DNA polymerase. Nucleotide incorporation opposite G-AF is achieved in solution and in the crystal, revealing how the polymerase accommodates and replicates past G-AF, but not G-AAF. Like an unmodified guanine, G-AF adopts a conformation that allows it to form Watson-Crick hydrogen bonds with an opposing cytosine that results in protrusion of the bulky fluorene moiety into the major groove. Although incorporation opposite G-AF is observed, the C:G-AF base pair induces distortions to the polymerase active site that slow translesion synthesis.
Department of Biochemistry, Duke University Medical Center, Durham, North Carolina 27710, USA.