1U6Q

Substituted 2-Naphthamadine inhibitors of Urokinase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.290 
  • R-Value Work: 0.270 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Naphthamidine urokinase plasminogen activator inhibitors with improved pharmacokinetic properties.

Bruncko, M.McClellan, W.J.Wendt, M.D.Sauer, D.R.Geyer, A.Dalton, C.R.Kaminski, M.A.Weitzberg, M.Gong, J.Dellaria, J.F.Mantei, R.Zhao, X.Nienaber, V.L.Stewart, K.Klinghofer, V.Bouska, J.Rockway, T.W.Giranda, V.L.

(2005) Bioorg.Med.Chem.Lett. 15: 93-98

  • DOI: 10.1016/j.bmcl.2004.10.026

  • PubMed Abstract: 
  • A series of non-amide-linked 6-substituted-2-naphthamidine urokinase plasminogen activator (uPA) inhibitors are described. These compounds possess excellent binding activities and selectivities with significantly improved pharmacokinetic profiles ver ...

    A series of non-amide-linked 6-substituted-2-naphthamidine urokinase plasminogen activator (uPA) inhibitors are described. These compounds possess excellent binding activities and selectivities with significantly improved pharmacokinetic profiles versus previously described amide-linked inhibitors.


    Organizational Affiliation

    Cancer Research, Global Pharmaceutical R&D, Abbott Laboratories, 100 Abbott Park Road, Abbott Park, IL 60064-6101, USA. milan.bruncko@abbott.com




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Urokinase-type plasminogen activator
A
245Homo sapiensMutation(s): 0 
Gene Names: PLAU
EC: 3.4.21.73
Find proteins for P00749 (Homo sapiens)
Go to Gene View: PLAU
Go to UniProtKB:  P00749
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
745
Query on 745

Download SDF File 
Download CCD File 
A
TRANS-6-(2-PHENYLCYCLOPROPYL)-NAPHTHALENE-2-CARBOXAMIDINE
C20 H18 N2
NQRIWXVAIWPBEM-OALUTQOASA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
745Ki: 1259 - 1310 nM (99) BINDINGDB
745Ki: 1310 nM PDBBIND
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.290 
  • R-Value Work: 0.270 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 55.160α = 90.00
b = 53.000β = 90.00
c = 82.300γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2004-10-19
    Type: Initial release
  • Version 1.1: 2008-04-30
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance