1U0K | pdb_00001u0k

The structure of a Predicted Epimerase PA4716 from Pseudomonas aeruginosa

PDB DOI: https://doi.org/10.2210/pdb1U0K/pdb

Classification: structural genomics, unknown function
Organism(s): Pseudomonas aeruginosa PAO1
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2004-07-13 Released: 2004-09-14
Deposition Author(s): Cuff, M.E., Ginell, S.L., Rotella, F.J., Xu, X., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free:
0.189 (Depositor), 0.189 (DCC)
R-Value Work:
0.167 (Depositor), 0.169 (DCC)
R-Value Observed:
0.168 (Depositor)

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This is version 1.4 of the entry. See complete history.

Literature

The structure of hypothetical protein PA4716 from Pseudomonas aeruginosa

Cuff, M.E., Ginell, S.J., Rotella, F.J., Xu, X., Savchenko, A., Edwards, A., Joachimiak, A.

To be published.

Macromolecule Content

Total Structure Weight: 62.73 kDa
Atom Count: 5,262
Modeled Residue Count: 566
Deposited Residue Count: 576
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
gene product PA4716	A, B	288	Pseudomonas aeruginosa PAO1	Mutation(s): 3 Gene Names: PA4716
UniProt
Find proteins for Q9HV82 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q9HV82 Go to UniProtKB: Q9HV82
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9HV82
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.189 (Depositor), 0.189 (DCC)
R-Value Work: 0.167 (Depositor), 0.169 (DCC)
R-Value Observed: 0.168 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.778	α = 90
b = 69.477	β = 101.1
c = 94.95	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SBC-Collect	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SOLVE	phasing
autoSHARP	phasing
CNS	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2004-09-14

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2004-09-14
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.3: 2019-08-14
Changes: Data collection, Derived calculations, Structure summary
Version 1.4: 2024-10-09
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.