1TYX

TITLE OF TAILSPIKE-PROTEIN

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Work: 0.183 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history. 

Literature

Crystal structure of phage P22 tailspike protein complexed with Salmonella sp. O-antigen receptors.

Steinbacher, S., Baxa, U., Miller, S., Weintraub, A., Seckler, R., Huber, R.

(1996) Proc.Natl.Acad.Sci.USA 93: 10584-10588

  • Primary Citation of Related Structures:  
  • Also Cited By: 3TH0

  • PubMed Abstract: 

    • The O-antigenic repeating units of lipopolysaccharides from Salmonella serogroups A, B, and D1 serve as receptors for the phage P22 tailspike protein, which also has receptor destroying endoglycosidase (endorhamnosidase) activity, integrating the fun ...

    The O-antigenic repeating units of lipopolysaccharides from Salmonella serogroups A, B, and D1 serve as receptors for the phage P22 tailspike protein, which also has receptor destroying endoglycosidase (endorhamnosidase) activity, integrating the functions of both hemagglutinin and neuraminidase in influenza virus. Crystal structures of the tailspike protein in complex with oligosaccharides, comprising two O-antigenic repeating units from Salmonella typhimurium, Salmonella enteritidis, and Salmonella typhi 253Ty were determined at 1.8 A resolution. The active-site topology with Asp-392, Asp-395, and Glu-359 as catalytic residues was identified. Kinetics of binding and cleavage suggest a role of the receptor destroying endorhamnosidase activity primarily for detachment of newly assembled phages.

    Related Citations: 
    • Crystal Structure of P22 Tailspike Protein: Interdigitated Subunits in a Thermostable Trimer
      Steinbacher, S.,Seckler, R.,Miller, S.,Steipe, B.,Huber, R.,Reinemer, P.
      (1994) Science 265: 383
    • Interactions of Phage P22 Tails with Their Cellular Receptor, Salmonella O-Antigen Polysaccharide
      Baxa, U.,Steinbacher, S.,Miller, S.,Weintraub, A.,Huber, R.,Seckler, R.
      (1996) Biophys.J. 71: 2040

    Organizational Affiliation: 

    Abteilung Strukturforschung, Max-Planck-Institut für Biochemie, Martinsried, Germany.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
TAILSPIKE PROTEIN
A
554Salmonella phage P22Mutation(s): 0 
Gene Names: 9
Find proteins for P12528 (Salmonella phage P22)
Go to UniProtKB:  P12528
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
RAM
Query on RAM
Download SDF File 
Download CCD File 
A
ALPHA-L-RHAMNOSE
C6 H12 O5
SHZGCJCMOBCMKK-HGVZOGFYSA-N
 Ligand Interaction
MAN
Query on MAN
Download SDF File 
Download CCD File 
A
ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
 Ligand Interaction
ABE
Query on ABE
Download SDF File 
Download CCD File 
A
ABEQUOSE
C6 H12 O4
KYPWIZMAJMNPMJ-KAZBKCHUSA-N
 Ligand Interaction
GLA
Query on GLA
Download SDF File 
Download CCD File 
A
ALPHA D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-PHYPRBDBSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Work: 0.183 
  • Space Group: P 21 3
Unit Cell:
Length (Å)Angle (°)
a = 120.900α = 90.00
b = 120.900β = 90.00
c = 120.900γ = 90.00
Software Package:
Software NamePurpose
X-PLORphasing
X-PLORmodel building
X-PLORrefinement
MOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots


View more in-depth experimental data

Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1997-07-23
    Type: Initial release
  • Version 1.1: 2008-03-03
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Derived calculations, Version format compliance