1TQ3 | pdb_00001tq3

Higher resolution crystal structure of the third PDZ domain of post synaptic PSD-95 protein

• PDB DOI: https://doi.org/10.2210/pdb1TQ3/pdb

• Classification: PEPTIDE BINDING PROTEIN
• Organism(s): Rattus norvegicus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2004-06-16 Released: 2005-09-20 
• Deposition Author(s): Saro, D., Vickrey, J., Wawrzak, Z., Kovari, L., Spaller, M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.89 Å
• R-Value Free: 
  0.296 (Depositor) 
• R-Value Work: 
  0.235 (Depositor), 0.240 (DCC) 
• R-Value Observed: 
  0.238 (Depositor) 

Literature

Higher resolution crystal structure of the third PDZ domain of post synaptic PSD-95 protein.

Saro, D., Vickrey, J., Wawrzak, Z., Kovari, L., Spaller, M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 12.74 kDa 
• Atom Count: 888 
• Modeled Residue Count: 110 
• Deposited Residue Count: 119 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Presynaptic density protein 95	A	119	Rattus norvegicus	Mutation(s): 0  Gene Names: DLG4, DLGH4, PSD95
UniProt
Find proteins for P31016 (Rattus norvegicus) Explore P31016  Go to UniProtKB:  P31016

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.89 Å
• R-Value Free:  0.296 (Depositor) 
• R-Value Work:  0.235 (Depositor), 0.240 (DCC) 
• R-Value Observed: 0.238 (Depositor) 

Space Group: P 4₁ 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 89.262	α = 90
b = 89.262	β = 90
c = 89.262	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
d*TREK	data scaling
XTALVIEW	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-09-20 
Deposition Author(s): Saro, D., Vickrey, J., Wawrzak, Z., Kovari, L., Spaller, M.

Revision History  

• Version 1.0: 2005-09-20
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2017-10-11
  Changes: Refinement description
• Version 1.4: 2024-02-14
  Changes: Data collection, Database references