1TOZ

NMR structure of the human NOTCH-1 ligand binding region


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 600 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural and functional properties of the human notch-1 ligand binding region

Hambleton, S.Valeyev, N.V.Muranyi, A.Knott, V.Werner, J.M.McMichael, A.J.Handford, P.A.Downing, A.K.

(2004) STRUCTURE 12: 2173-2183

  • DOI: 10.1016/j.str.2004.09.012

  • PubMed Abstract: 
  • We present NMR structural and dynamics analysis of the putative ligand binding region of human Notch-1, comprising EGF-like domains 11-13. Functional integrity of an unglycosylated, recombinant fragment was confirmed by calcium-dependent binding of t ...

    We present NMR structural and dynamics analysis of the putative ligand binding region of human Notch-1, comprising EGF-like domains 11-13. Functional integrity of an unglycosylated, recombinant fragment was confirmed by calcium-dependent binding of tetrameric complexes to ligand-expressing cells. EGF modules 11 and 12 adopt a well-defined, rod-like orientation rigidified by calcium. The interdomain tilt is similar to that found in previously studied calcium binding EGF pairs, but the angle of twist is significantly different. This leads to an extended double-stranded beta sheet structure, spanning the two EGF modules. Based on the conservation of residues involved in interdomain hydrophobic packing, we propose this arrangement to be prototypical of a distinct class of EGF linkages. On this premise, we have constructed a model of the 36 EGF modules of the Notch extracellular domain that enables predictions to be made about the general role of calcium binding to this region.


    Related Citations: 
    • 1H, 13C, and 15N resonance assignments of human Notch-1 calcium binding EGF domains 11-13
      Muranyi, A.,Hambleton, S.,Knott, V.,McMichael, A.,Handford, P.A.,Downing, A.K.
      (2004) J.Biomol.Nmr 29: 443


    Organizational Affiliation

    Division of Molecular and Cellular Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Neurogenic locus notch homolog protein 1
A
116Homo sapiensMutation(s): 1 
Gene Names: NOTCH1 (TAN1)
Find proteins for P46531 (Homo sapiens)
Go to Gene View: NOTCH1
Go to UniProtKB:  P46531
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 600 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 
  • Olderado: 1TOZ Olderado

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2004-10-12
    Type: Initial release
  • Version 1.1: 2008-04-30
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance