1TLT | pdb_00001tlt

Crystal Structure of a Putative Oxidoreductase (VIRULENCE FACTOR mviM HOMOLOG)

• PDB DOI: https://doi.org/10.2210/pdb1TLT/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Escherichia coli
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2004-06-09 Released: 2004-06-22 
• Deposition Author(s): Rajashankar, K.R., Solorzano, V., Kniewel, R., Lima, C.D., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.70 Å
• R-Value Free: 
  0.294 (Depositor), 0.291 (DCC) 
• R-Value Work: 
  0.245 (Depositor), 0.242 (DCC) 
• R-Value Observed: 
  0.245 (Depositor) 

Starting Model: experimental

Literature

Crystal Structure of a Putative Oxidoreductase (VIRULENCE FACTOR mviM HOMOLOG)

RAJASHANKAR, K.R., SOLORZANO, V., KNIEWEL, R., LIMA, C.D.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA,PQS (software)

Macromolecule Content 

• Total Structure Weight: 70.94 kDa 
• Atom Count: 4,767 
• Modeled Residue Count: 609 
• Deposited Residue Count: 638 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PUTATIVE OXIDOREDUCTASE (VIRULENCE FACTOR mviM HOMOLOG)	A, B	319	Escherichia coli	Mutation(s): 0  Gene Names: MVIM, B1068 EC: 1
UniProt
Find proteins for P75931 (Escherichia coli (strain K12)) Explore P75931  Go to UniProtKB:  P75931

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	C [auth A], D [auth A], E [auth A], F [auth A], G [auth B], H [auth B], I [auth B], J [auth B]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.70 Å
• R-Value Free:  0.294 (Depositor), 0.291 (DCC) 
• R-Value Work:  0.245 (Depositor), 0.242 (DCC) 
• R-Value Observed: 0.245 (Depositor) 

Space Group: P 6₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 96.856	α = 90
b = 96.856	β = 90
c = 380.817	γ = 120

Software Package:

Software Name	Purpose
CNS	refinement
DENZO	data reduction
SCALEPACK	data scaling
MLPHARE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-06-22 
Deposition Author(s): Rajashankar, K.R., Solorzano, V., Kniewel, R., Lima, C.D., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History  

• Version 1.0: 2004-06-22
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Derived calculations, Version format compliance
• Version 1.3: 2021-02-03
  Changes: Database references, Derived calculations, Structure summary
• Version 1.4: 2024-02-14
  Changes: Data collection, Database references
• Version 1.5: 2024-04-03
  Changes: Refinement description