1TKJ

Streptomyces griseus aminopeptidase complexed with D-Methionine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.15 Å
  • R-Value Free: 0.151 
  • R-Value Work: 0.117 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Interactions of D Amino Acids with Streptomyces griseus Aminopeptidase

Reiland, V.Gilboa, R.Spungin-Bialik, A.Schomburg, D.Shoham, Y.Blumberg, S.Shoham, G.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Aminopeptidase
A
284Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350)Mutation(s): 0 
EC: 3.4.11.24
Find proteins for P80561 (Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350))
Go to UniProtKB:  P80561
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
CA
Query on CA

Download SDF File 
Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
MED
Query on MED

Download SDF File 
Download CCD File 
A
D-METHIONINE
C5 H11 N O2 S
FFEARJCKVFRZRR-SCSAIBSYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.15 Å
  • R-Value Free: 0.151 
  • R-Value Work: 0.117 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 60.962α = 90.00
b = 60.962β = 90.00
c = 144.705γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
SHELXL-97refinement
CNSphasing
SCALEPACKdata scaling
SHELXmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2005-06-14
    Type: Initial release
  • Version 1.1: 2008-04-30
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance