1TH4 | pdb_00001th4

crystal structure of NADPH depleted bovine liver catalase complexed with 3-amino-1,2,4-triazole

PDB DOI: https://doi.org/10.2210/pdb1TH4/pdb

Classification: OXIDOREDUCTASE
Organism(s): Bos taurus
Mutation(s): No

Deposited: 2004-06-01 Released: 2005-07-05
Deposition Author(s): Sugadev, R., Ponnuswamy, M.N., Kumaran, D., Swaminathan, S., Sekar, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.98 Å
R-Value Free:
0.292 (Depositor), 0.278 (DCC)
R-Value Work:
0.235 (Depositor), 0.220 (DCC)
R-Value Observed:
0.235 (Depositor)

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.3 of the entry. See complete history.

Literature

crystal structure of bovine liver catalase

Sugadev, R., Ponnuswamy, M.N., Kumaran, D., Swaminathan, S., Sekar, K.

To be published.

Macromolecule Content

Total Structure Weight: 233.21 kDa
Atom Count: 16,915
Modeled Residue Count: 1,996
Deposited Residue Count: 2,024
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Catalase	A, B, C, D	506	Bos taurus	Mutation(s): 0 EC: 1.11.1.6
UniProt
Find proteins for P00432 (Bos taurus) Explore P00432 Go to UniProtKB: P00432
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P00432
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
HEM Query on HEM Download:Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain F [auth B] SDF format, chain I [auth D] SDF format, chain G [auth C] MOL2 format, chain E [auth A] MOL2 format, chain F [auth B] MOL2 format, chain I [auth D] MOL2 format, chain G [auth C] mmCIF format, chain E [auth A] mmCIF format, chain F [auth B] mmCIF format, chain I [auth D] mmCIF format, chain G [auth C]	E [auth A], F [auth B], G [auth C], I [auth D]	PROTOPORPHYRIN IX CONTAINING FE C₃₄ H₃₂ Fe N₄ O₄ KABFMIBPWCXCRK-RGGAHWMASA-L		Interactions Focus chain E [auth A] Focus chain F [auth B] Focus chain G [auth C] Focus chain I [auth D] Interactions & Density Focus chain E [auth A] Focus chain F [auth B] Focus chain G [auth C] Focus chain I [auth D]
3TR Query on 3TR Download:Ideal Coordinates CCD File SDF format, chain H [auth D] MOL2 format, chain H [auth D] mmCIF format, chain H [auth D]	H [auth D]	3-AMINO-1,2,4-TRIAZOLE C₂ H₄ N₄ KLSJWNVTNUYHDU-UHFFFAOYSA-N		Interactions Focus chain H [auth D] Interactions & Density Focus chain H [auth D]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.98 Å
R-Value Free: 0.292 (Depositor), 0.278 (DCC)
R-Value Work: 0.235 (Depositor), 0.220 (DCC)
R-Value Observed: 0.235 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 85.03	α = 90
b = 141.09	β = 90
c = 231	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
DENZO	data reduction
SCALEPACK	data scaling
AMoRE	phasing

Structure Validation

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Ligand Structure Quality Assessment

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Entry History

Deposition Data

Released Date: 2005-07-05

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2005-07-05
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2024-11-20
Changes: Data collection, Database references, Derived calculations, Structure summary

1TH4 | pdb_00001th4

crystal structure of NADPH depleted bovine liver catalase complexed with 3-amino-1,2,4-triazole

Literature

crystal structure of bovine liver catalase

Biological Assembly 1

Macromolecules

Entity ID: 1

UniProt

Entity Groups

Sequence Annotations

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