1T84 | pdb_00001t84

Solution structure of the Wiskott-Aldrich Syndrome Protein (WASP) autoinhibited core domain complexed with (S)-wiskostatin, a small molecule inhibitor


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 1T84

This is version 1.4 of the entry. See complete history

Literature

Chemical inhibition of N-WASP by stabilization of a native autoinhibited conformation.

Peterson, J.R.Bickford, L.C.Morgan, D.Kim, A.S.Ouerfelli, O.Kirschner, M.W.Rosen, M.K.

(2004) Nat Struct Mol Biol 11: 747-755

  • DOI: https://doi.org/10.1038/nsmb796
  • Primary Citation Related Structures: 
    1T84

  • PubMed Abstract: 

    Current drug discovery efforts focus primarily on proteins with defined enzymatic or small molecule binding sites. Autoregulatory domains represent attractive alternative targets for small molecule inhibitors because they also occur in noncatalytic proteins and because allosteric inhibitors may avoid specificity problems inherent in active site-directed inhibitors. We report here the identification of wiskostatin, a chemical inhibitor of the neural Wiskott-Aldrich syndrome protein (N-WASP). Wiskostatin interacts with a cleft in the regulatory GTPase-binding domain (GBD) of WASP in the solution structure of the complex. Wiskostatin induces folding of the isolated, unstructured GBD into its autoinhibited conformation, suggesting that wiskostatin functions by stabilizing N-WASP in its autoinhibited state. The use of small molecules to bias conformational equilibria represents a potentially general strategy for chemical inhibition of autoinhibited proteins, even in cases where such sites have not been naturally evolved in a target.


  • Organizational Affiliation
    • Department of Cell Biology, Harvard Medical School, 240 Longwood Avenue, Boston, Massachusetts 02115, USA.

Macromolecule Content 

  • Total Structure Weight: 12.03 kDa 
  • Atom Count: 836 
  • Modeled Residue Count: 107 
  • Deposited Residue Count: 107 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Wiskott-Aldrich syndrome protein107Homo sapiensMutation(s): 0 
Gene Names: WASP (residues 242-310 and 461-492)
UniProt & NIH Common Fund Data Resources
Find proteins for P42768 (Homo sapiens)
Explore P42768 
Go to UniProtKB:  P42768
PHAROS:  P42768
GTEx:  ENSG00000015285 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP42768
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
WSK

Query on WSK



Download:Ideal Coordinates CCD File
B [auth A](2S)-1-(3,6-DIBROMO-9H-CARBAZOL-9-YL)-3-(DIMETHYLAMINO)PROPAN-2-OL
C17 H18 Br2 N2 O
XUBJEDZHBUPBKL-ZDUSSCGKSA-N

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2004-07-13
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2022-03-02
    Changes: Database references, Derived calculations
  • Version 1.4: 2024-05-22
    Changes: Data collection