1T71 | pdb_00001t71

Crystal structure of a novel phosphatase Mycoplasma pneumoniaefrom

PDB DOI: https://doi.org/10.2210/pdb1T71/pdb

Classification: HYDROLASE
Organism(s): Mycoplasmoides pneumoniae M129
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2004-05-07 Released: 2004-12-07
Deposition Author(s): Shin, D.H., Jancarik, J., Kim, R., Yokota, H., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free:
0.247 (Depositor), 0.258 (DCC)
R-Value Work:
0.215 (Depositor), 0.227 (DCC)
R-Value Observed:
0.215 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 1T71

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of a novel phosphatase from Mycoplasma pneumoniae

Shin, D.H., Jancarik, J., Kim, R., Yokota, H., Kim, S.-H.

To be published.

Macromolecule Content

Total Structure Weight: 31.58 kDa
Atom Count: 2,437
Modeled Residue Count: 281
Deposited Residue Count: 281
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
phosphatase	A	281	Mycoplasmoides pneumoniae M129	Mutation(s): 0 EC: 3.1
UniProt
Find proteins for P75429 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)) Explore P75429 Go to UniProtKB: P75429
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P75429
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FE Query on FE Download:Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain B [auth A] MOL2 format, chain C [auth A] MOL2 format, chain B [auth A] mmCIF format, chain C [auth A] mmCIF format, chain B [auth A]	B [auth A], C [auth A]	FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A] Interactions & Density Focus chain B [auth A] Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.247 (Depositor), 0.258 (DCC)
R-Value Work: 0.215 (Depositor), 0.227 (DCC)
R-Value Observed: 0.215 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 84.896	α = 90
b = 84.896	β = 90
c = 162.726	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
SCALEPACK	data scaling
EPMR	phasing
CNS	refinement
HKL-2000	data reduction

Structure Validation

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Entry History

Deposition Data

Released Date: 2004-12-07

Deposition Author(s):

Berkeley Structural Genomics Center (BSGC)

Revision History (Full details and data files)

Version 1.0: 2004-12-07
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance
Version 1.3: 2024-02-14
Changes: Data collection, Database references, Derived calculations

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.