Biological Assembly 1  

 3D View: Structure | 1D-3D View | Validation Report

Global Symmetry: Icosahedral - I  (3D View)
Global Stoichiometry: Homo 360-mer - A360 

Biological assembly 1 assigned by authors and generated by (software)

Macromolecule Content

• Total Structure Weight: 238.91 kDa 
• Atom Count: 15983 
• Modelled Residue Count: 2057 
• Deposited Residue Count: 2166 
• Unique protein chains: 1

1SVA

SIMIAN VIRUS 40

• PDB DOI: 10.2210/pdb1SVA/pdb

• Classification: VIRUS
• Organism(s): Macaca mulatta polyomavirus 1
• Mutation(s): No 


• Deposited: 1995-11-27 Released: 1996-06-10 
• Deposition Author(s): Stehle, T., Gamblin, S.J., Harrison, S.C.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.10 Å
• R-Value Free: 0.268 
• R-Value Work: 0.257 
• R-Value Observed: 0.257 

Literature

The structure of simian virus 40 refined at 3.1 A resolution.

Stehle, T., Gamblin, S.J., Yan, Y., Harrison, S.C.

(1996) Structure 4: 165-182

• PubMed: 8805523 
• DOI: 10.1016/s0969-2126(96)00020-2
• Primary Citation of Related Structures:  
  1SVA


• PubMed Abstract: 
  

The structure of simian virus 40 (SV40), previously determined at 3.8 degree resolution, shows how its pentameric VP1 assembly units are tied together by extended C-terminal arms. In order to define more precisely the possible assembly mechanisms, we have refined the structure at 3.1 degree resolution.

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Related Citations: 

• Structure of Simian Virus 40 at 3.8-A Resolution
  Liddington, R.C., Yan, Y., Moulai, J., Sahli, R., Benjamin, T.L., Harrison, S.C.
  (1991) Nature 354: 278

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Organizational Affiliation: 

Howard Hughes Medical Institute and Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
SIMIAN VIRUS 40	A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], F [auth 6]	361	Macaca mulatta polyomavirus 1	Mutation(s): 0
UniProt
Find proteins for P03087 (Simian virus 40) Explore P03087  Go to UniProtKB:  P03087

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.10 Å
• R-Value Free: 0.268 
• R-Value Work: 0.257 
• R-Value Observed: 0.257 
• Space Group: I 2 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 558	α = 90
b = 558	β = 90
c = 558	γ = 90

Software Package:

Software Name	Purpose
X-PLOR	model building
X-PLOR	refinement
X-PLOR	phasing

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 1995-11-27 
• Released Date: 1996-06-10 
Deposition Author(s): Stehle, T., Gamblin, S.J., Harrison, S.C.

Revision History  

• Version 1.0: 1996-06-10
  Type: Initial release
  
• Version 1.1: 2008-03-24
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance