1SVA

SIMIAN VIRUS 40


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.257 
  • R-Value Observed: 0.257 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The structure of simian virus 40 refined at 3.1 A resolution.

Stehle, T.Gamblin, S.J.Yan, Y.Harrison, S.C.

(1996) Structure 4: 165-182

  • DOI: 10.1016/s0969-2126(96)00020-2
  • Primary Citation of Related Structures:  
    1SVA

  • PubMed Abstract: 
  • The structure of simian virus 40 (SV40), previously determined at 3.8 degree resolution, shows how its pentameric VP1 assembly units are tied together by extended C-terminal arms. In order to define more precisely the possible assembly mechanisms, we have refined the structure at 3 ...

    The structure of simian virus 40 (SV40), previously determined at 3.8 degree resolution, shows how its pentameric VP1 assembly units are tied together by extended C-terminal arms. In order to define more precisely the possible assembly mechanisms, we have refined the structure at 3.1 degree resolution.


    Related Citations: 
    • Structure of Simian Virus 40 at 3.8-A Resolution
      Liddington, R.C., Yan, Y., Moulai, J., Sahli, R., Benjamin, T.L., Harrison, S.C.
      (1991) Nature 354: 278

    Organizational Affiliation

    Howard Hughes Medical Institute and Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
SIMIAN VIRUS 40A [auth 1], B [auth 2], C [auth 3], D [auth 4], E [auth 5], F [auth 6]361Macaca mulatta polyomavirus 1Mutation(s): 0 
Find proteins for P03087 (Simian virus 40)
Explore P03087 
Go to UniProtKB:  P03087
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.257 
  • R-Value Observed: 0.257 
  • Space Group: I 2 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 558α = 90
b = 558β = 90
c = 558γ = 90
Software Package:
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
X-PLORphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1996-06-10
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance