Biological Assembly 1  

 3D View: Structure | 1D-3D View | Validation Report

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 5.32 kDa 
• Atom Count: 365 
• Modelled Residue Count: 48 
• Deposited Residue Count: 48 
• Unique protein chains: 1

1SSL

Solution structure of the PSI domain from the Met receptor

• PDB DOI: 10.2210/pdb1SSL/pdb
• BMRB: 6165

• Classification: STRUCTURAL PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2004-03-24 Released: 2004-10-12 
• Deposition Author(s): Kozlov, G., Perreault, A., Schrag, J.D., Cygler, M., Gehring, K., Ekiel, I.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

Insights into function of PSI domains from structure of the Met receptor PSI domain.

Kozlov, G., Perreault, A., Schrag, J.D., Park, M., Cygler, M., Gehring, K., Ekiel, I.

(2004) Biochem Biophys Res Commun 321: 234-240

• PubMed: 15358240 
• DOI: 10.1016/j.bbrc.2004.06.132
• Primary Citation of Related Structures:  
  1SSL


• PubMed Abstract: 
  

PSI domains are cysteine-rich modules found in extracellular fragments of hundreds of signaling proteins, including plexins, semaphorins, integrins, and attractins. Here, we report the solution structure of the PSI domain from the human Met receptor, a receptor tyrosine kinase critical for proliferation, motility, and differentiation. The structure represents a cysteine knot with short regions of secondary structure including a three-stranded antiparallel beta-sheet and two alpha-helices. All eight cysteines are involved in disulfide bonds with the pattern consistent with that for the PSI domain from Sema4D. Comparison with the Sema4D structure identifies a structurally conserved core comprising the N-terminal half of the PSI domain. Interestingly, this part links adjacent SEMA and immunoglobulin domains in the Sema4D structure, suggesting that the PSI domain serves as a wedge between propeller and immunoglobulin domains and is responsible for the correct positioning of the ligand-binding site of the receptor.

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Organizational Affiliation: 

Department of Biochemistry, McGill University, 3655 Promenade Sir William Osler, Montréal, Que., Canada H3G 1Y6.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hepatocyte growth factor receptor	A	48	Homo sapiens	Mutation(s): 0  Gene Names: MET EC: 2.7.10.1
UniProt & NIH Common Fund Data Resources
Find proteins for P08581 (Homo sapiens) Explore P08581  Go to UniProtKB:  P08581
PHAROS:  P08581 GTEx:  ENSG00000105976

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 
• OLDERADO: 1SSL Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2004-03-24 
• Released Date: 2004-10-12 
Deposition Author(s): Kozlov, G., Perreault, A., Schrag, J.D., Cygler, M., Gehring, K., Ekiel, I.

Revision History  

• Version 1.0: 2004-10-12
  Type: Initial release
  
• Version 1.1: 2008-04-29
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-02
  Changes: Data collection, Database references, Derived calculations