1SRI

STRUCTURE-BASED DESIGN OF SYNTHETIC AZOBENZENE LIGANDS FOR STREPTAVIDIN


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Structure-Based Design of Synthetic Azobenzene Ligands for Streptavidin

Weber, P.C.Pantoliano, M.W.Simons, D.M.Salemme, F.R.

(1994) J.Am.Chem.Soc. 116: 2717


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
STREPTAVIDIN
A, B
121Streptomyces avidiniiMutation(s): 0 
Find proteins for P22629 (Streptomyces avidinii)
Go to UniProtKB:  P22629
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
DMB
Query on DMB

Download SDF File 
Download CCD File 
A, B
2-((3',5'-DIMETHYL-4'-HYDROXYPHENYL)AZO)BENZOIC ACID
C15 H14 N2 O3
ZMDQWZFZPGJFPM-WUKNDPDISA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
DMBKi: 830 nM BINDINGMOAD
DMBKd: 830 nM PDBBIND
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 95.600α = 90.00
b = 106.000β = 90.00
c = 47.900γ = 90.00
Software Package:
Software NamePurpose
PROFFTrefinement
PROLSQrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1994-11-01
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Derived calculations, Version format compliance
  • Version 1.3: 2012-10-10
    Type: Other