1SPV

Crystal Structure of the Putative Phosphatase of Escherichia coli, Northeast Structural Genomoics Target ER58


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.201 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal Structure of the Putative Phosphatase of Escherichia coli, Northeast Structural Genomoics Target ER58

Forouhar, F.Lee, I.Vorobiev, S.M.Xiao, R.Acton, T.B.Montelione, G.T.Hunt, J.F.Tong, L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
putative polyprotein/phosphatase
A
184Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: ymdB
EC: 3.1.1.106
Find proteins for P0A8D6 (Escherichia coli (strain K12))
Go to UniProtKB:  P0A8D6
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MES
Query on MES

Download SDF File 
Download CCD File 
A
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.201 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 59.788α = 90.00
b = 40.855β = 103.49
c = 69.346γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
CNSrefinement
Shakemodel building
SCALEPACKdata scaling
SOLVEphasing
SnBphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2004-04-06
    Type: Initial release
  • Version 1.1: 2008-04-29
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2017-10-11
    Type: Refinement description