1SMV

PRIMARY STRUCTURE OF SESBANIA MOSAIC VIRUS COAT PROTEIN: ITS IMPLICATIONS TO THE ASSEMBLY AND ARCHITECTURE OF THE VIRUS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Work: 0.227 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structure of sesbania mosaic virus at 3 A resolution.

Bhuvaneshwari, M.Subramanya, H.S.Gopinath, K.Savithri, H.S.Nayudu, M.V.Murthy, M.R.

(1995) Structure 3: 1021-1030


  • PubMed Abstract: 
  • Sobemoviruses are a group of RNA plant viruses that have a narrow host range. They are characterized in vitro by their stability, high thermal inactivation point and longevity. The three-dimensional structure of only one virus belonging to this group ...

    Sobemoviruses are a group of RNA plant viruses that have a narrow host range. They are characterized in vitro by their stability, high thermal inactivation point and longevity. The three-dimensional structure of only one virus belonging to this group, southern bean mosaic virus (SBMV), is known. Structural studies on sesbania mosaic virus (SMV), which is closely related to SBMV, will provide details of the molecular interactions that are likely to be important in the stability and assembly of sobemoviruses.


    Related Citations: 
    • Purification and Partial Characterization of Sesbania Mosaic Virus
      Sreenivasulu, P.,Nayudu, M.V.
      (1982) Curr.Sci. 51: 86
    • Structure of Sesbania Mosaic Virus at 4.7 Angstroms Resolution and Partial Sequence of the Coat Protein
      Subramanya, H.S.,Gopinath, K.,Nayudu, M.V.,Savithri, H.S.,Murthy, M.R.N.
      (1993) J.Mol.Biol. 229: 20


    Organizational Affiliation

    Molecular Biophysics Unit, Indian Institute of Science, Bangalore, India.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
SESBANIA MOSAIC VIRUS COAT PROTEIN
A, B, C
266Sesbania mosaic virusMutation(s): 0 
Find proteins for Q9EB06 (Sesbania mosaic virus)
Go to UniProtKB:  Q9EB06
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A, C
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Work: 0.227 
  • Space Group: R 3
Unit Cell:
Length (Å)Angle (°)
a = 291.460α = 61.95
b = 291.460β = 61.95
c = 291.460γ = 61.95
Software Package:
Software NamePurpose
X-PLORphasing
X-PLORrefinement
X-PLORmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1995-09-15
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance