1SED

Crystal Structure of Protein of Unknown Function YhaL from Bacillus subtilis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.189 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The Crystal Structure of the Hypothetical Protein YhaI, APC1180 from Bacillus subtilis

Kim, Y.Joachimiak, A.Evdokimova, E.Savchenko, A.Edwards, A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Hypothetical protein yhaIA, B, C117Bacillus subtilisMutation(s): 0 
Gene Names: yhaI
UniProt
Find proteins for O07517 (Bacillus subtilis (strain 168))
Explore O07517 
Go to UniProtKB:  O07517
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MPD
Query on MPD

Download Ideal Coordinates CCD File 
AA [auth C] , BA [auth C] , CA [auth C] , DA [auth C] , F [auth A] , G [auth A] , H [auth A] , I [auth A] , 
AA [auth C],  BA [auth C],  CA [auth C],  DA [auth C],  F [auth A],  G [auth A],  H [auth A],  I [auth A],  J [auth A],  K [auth A],  P [auth B],  Q [auth B],  R [auth B],  S [auth B],  T [auth B],  Y [auth C],  Z [auth C]
(4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
 Ligand Interaction
GOL
Query on GOL

Download Ideal Coordinates CCD File 
EA [auth C], FA [auth C], L [auth A], M [auth A], U [auth B], V [auth B]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
ZN
Query on ZN

Download Ideal Coordinates CCD File 
D [auth A], N [auth B], W [auth C]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
NA
Query on NA

Download Ideal Coordinates CCD File 
E [auth A], O [auth B], X [auth C]SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.189 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 56.784α = 111.37
b = 64.55β = 107.19
c = 64.503γ = 107.13
Software Package:
Software NamePurpose
CNSrefinement
SBC-Collectdata collection
HKL-2000data reduction
HKL-2000data scaling
autoSHARPphasing
ARP/wARPmodel building

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2004-05-25
    Type: Initial release
  • Version 1.1: 2008-04-29
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Non-polymer description, Version format compliance