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Download EndnoteCrystal structure of the complex of resistant strain of hiv-1 protease(v82a mutant) with ritonavir
Rezacova, P., Brynda, J., Sedlacek, J., Konvalinka, J., Fabry, M., Horejsi, M.To be published.
1RL8
Crystal structure of the complex of resistant strain of hiv-1 protease(v82a mutant) with ritonavir
- DOI: 10.2210/pdb1RL8/pdb
- Classification: HYDROLASE/HYDROLASE INHIBITOR
- Organism(s): Human immunodeficiency virus type 1 group M subtype B (isolate BRU/LAI)
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): 1
- Deposited: 2003-11-25 Released: 2005-04-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2 Å
- R-Value Free: 0.269
- R-Value Work: 0.226
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| protease RETROPEPSIN | A, B | 99 | Human immunodeficiency virus type 1 group M subtype B (isolate BRU/LAI) | Mutation(s): 1 Gene Names: gag-pol |
Find proteins for P03367 (Human immunodeficiency virus type 1 group M subtype B (isolate BRU/LAI)) Go to UniProtKB: P03367 | ||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| RIT Query on RIT | A | RITONAVIR A-84538 C37 H48 N6 O5 S2 NCDNCNXCDXHOMX-XGKFQTDJSA-N |  | Ligand Interaction | |
| Biologically Interesting Molecules 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
| PRD_001001 (RIT) Query on PRD_001001 | A | RITONAVIR | Peptide-like / Inhibitor | | -- |
| External Ligand Annotations | |
|---|---|
| ID | Binding Affinity (Sequence Identity %) |
| RIT | Kd: 0.6 - 0.6 nM (96) BINDINGDB |
| RIT | Ki: 0 - 109 nM (96) BINDINGDB |
| RIT | IC50: 67 nM (96) BINDINGDB |
| RIT | ΔG: -28.8 - -60.2 kJ/mol (95) BINDINGDB |
| RIT | ΔH: 0 - 73.2 kJ/mol (94) BINDINGDB |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2 Å
- R-Value Free: 0.269
- R-Value Work: 0.226
- Space Group: P 61
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 61.414 | α = 90.00 |
| b = 61.414 | β = 90.00 |
| c = 80.816 | γ = 120.00 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| CNS | phasing |
| SHELX | refinement |
Entry History
Deposition Data
- Deposited Date: 2003-11-25
- Released Date: 2005-04-19
- Deposition Author(s): Rezacova, P., Brynda, J., Sedlacek, J., Konvalinka, J., Fabry, M., Horejsi, M.
Revision History
- Version 1.0: 2005-04-19
Type: Initial release - Version 1.1: 2008-04-29
Type: Version format compliance - Version 1.2: 2011-07-13
Type: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary, Version format compliance - Version 1.3: 2013-02-27
Type: Other
