Crystal structure of the complex of resistant strain of hiv-1 protease(v82a mutant) with ritonavir
Rezacova, P., Brynda, J., Sedlacek, J., Konvalinka, J., Fabry, M., Horejsi, M.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
protease RETROPEPSIN | A, B | 99 | Human immunodeficiency virus 1 | Mutation(s): 2  Gene Names: gag-pol EC: 3.4.23.16 (PDB Primary Data), 2.7.7.49 (UniProt), 2.7.7.7 (UniProt), 3.1.26.13 (UniProt), 3.1.13.2 (UniProt), 2.7.7 (UniProt), 3.1 (UniProt) | ![]() |
Find proteins for P03367 (Human immunodeficiency virus type 1 group M subtype B (isolate BRU/LAI)) Explore P03367  Go to UniProtKB:  P03367 | |||||
Protein Feature ViewExpand | |||||
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Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
RIT Query on RIT | A | RITONAVIR C37 H48 N6 O5 S2 NCDNCNXCDXHOMX-XGKFQTDJSA-N | Ligand Interaction |
External Ligand Annotations  | |
---|---|
ID | Binding Affinity (Sequence Identity %) |
RIT | -TΔS:  50.27000045776367   kJ/mol  BindingDB |
RIT | Ki:  15   nM  BindingDB |
RIT | ΔG:  42.63999938964844   kJ/mol  BindingDB |
RIT | ΔH:  51   kJ/mol  BindingDB |
RIT | -TΔS:  36.369998931884766   kJ/mol  BindingDB |
RIT | Ki:  98   nM  BindingDB |
RIT | ΔG:  44.310001373291016   kJ/mol  BindingDB |
RIT | ΔG:  49.31999969482422   kJ/mol  BindingDB |
RIT | ΔG:  60.189998626708984   kJ/mol  BindingDB |
RIT | ΔH:  17.559999465942383   kJ/mol  BindingDB |
RIT | Ki:  0.800000011920929   nM  BindingDB |
RIT | ΔH:  14.630000114440918   kJ/mol  BindingDB |
RIT | ΔG:  54.7599983215332   kJ/mol  BindingDB |
RIT | Ki:  23   nM  BindingDB |
RIT | -TΔS:  62.7599983215332   kJ/mol  BindingDB |
RIT | ΔG:  45.97999954223633   kJ/mol  BindingDB |
RIT | ΔG:  40.130001068115234   kJ/mol  BindingDB |
RIT | -TΔS:  51.0099983215332   kJ/mol  BindingDB |
RIT | ΔG:  55.18000030517578   kJ/mol  BindingDB |
RIT | -TΔS:  66.48999786376953   kJ/mol  BindingDB |
RIT | ΔH:  12.119999885559082   kJ/mol  BindingDB |
RIT | ΔH:  25.079999923706055   kJ/mol  BindingDB |
RIT | Ki:  0.3700000047683716   nM  BindingDB |
RIT | Ki:  60   nM  BindingDB |
RIT | ΔG:  44.72999954223633   kJ/mol  BindingDB |
RIT | ΔH:  15.050000190734863   kJ/mol  BindingDB |
RIT | -TΔS:  64.81999969482422   kJ/mol  BindingDB |
RIT | -TΔS:  44.75   kJ/mol  BindingDB |
RIT | Ki:  40   nM  BindingDB |
RIT | ΔH:  15.470000267028809   kJ/mol  BindingDB |
RIT | ΔG:  51.83000183105469   kJ/mol  BindingDB |
RIT | Ki:  0.05999999865889549   nM  BindingDB |
RIT | ΔG:  41.79999923706055   kJ/mol  BindingDB |
RIT | -TΔS:  33.040000915527344   kJ/mol  BindingDB |
RIT | ΔG:  35.529998779296875   kJ/mol  BindingDB |
RIT | ΔH:  26.75   kJ/mol  BindingDB |
RIT | -TΔS:  34.70000076293945   kJ/mol  BindingDB |
RIT | ΔH:  12.960000038146973   kJ/mol  BindingDB |
RIT | ΔG:  51.83000183105469   kJ/mol  BindingDB |
RIT | ΔH:  5.019999980926514   kJ/mol  BindingDB |
RIT | ΔH:  12.119999885559082   kJ/mol  BindingDB |
RIT | ΔG:  56.0099983215332   kJ/mol  BindingDB |
RIT | -TΔS:  60.63999938964844   kJ/mol  BindingDB |
RIT | ΔH:  15.470000267028809   kJ/mol  BindingDB |
RIT | -TΔS:  42.25   kJ/mol  BindingDB |
RIT | Kd:  0.6000000238418579   nM  BindingDB |
RIT | ΔG:  36.369998931884766   kJ/mol  BindingDB |
RIT | -TΔS:  58.59000015258789   kJ/mol  BindingDB |
RIT | ΔH:  40.130001068115234   kJ/mol  BindingDB |
RIT | -TΔS:  64.81999969482422   kJ/mol  BindingDB |
RIT | ΔG:  49.31999969482422   kJ/mol  BindingDB |
RIT | -TΔS:  76.94999694824219   kJ/mol  BindingDB |
RIT | ΔH:  40.130001068115234   kJ/mol  BindingDB |
RIT | ΔG:  45.13999938964844   kJ/mol  BindingDB |
RIT | ΔH:  22.56999969482422   kJ/mol  BindingDB |
RIT | -TΔS:  75.27999877929688   kJ/mol  BindingDB |
RIT | ΔG:  40.959999084472656   kJ/mol  BindingDB |
RIT | ΔG:  39.709999084472656   kJ/mol  BindingDB |
RIT | Ki:  30   nM  BindingDB |
RIT | Ki:  1.100000023841858   nM  BindingDB |
RIT | -TΔS:  42.63999938964844   kJ/mol  BindingDB |
RIT | Ki:  1.2000000476837158   nM  BindingDB |
RIT | ΔG:  53.5   kJ/mol  BindingDB |
RIT | ΔG:  53.5   kJ/mol  BindingDB |
RIT | -TΔS:  46.41999816894531   kJ/mol  BindingDB |
RIT | ΔG:  57.68000030517578   kJ/mol  BindingDB |
RIT | ΔG:  43.470001220703125   kJ/mol  BindingDB |
RIT | -TΔS:  43.91999816894531   kJ/mol  BindingDB |
RIT | ΔG:  56.43000030517578   kJ/mol  BindingDB |
RIT | -TΔS:  80.29000091552734   kJ/mol  BindingDB |
RIT | -TΔS:  79.04000091552734   kJ/mol  BindingDB |
RIT | -TΔS:  43.91999816894531   kJ/mol  BindingDB |
RIT | ΔG:  31.770000457763672   kJ/mol  BindingDB |
RIT | ΔH:  73.1500015258789   kJ/mol  BindingDB |
RIT | -TΔS:  58.560001373291016   kJ/mol  BindingDB |
RIT | Ki:  0.019999999552965164   nM  BindingDB |
RIT | -TΔS:  76.94999694824219   kJ/mol  BindingDB |
RIT | Ki:  109   nM  BindingDB |
RIT | IC50:  67   nM  BindingDB |
RIT | ΔH:  0   kJ/mol  BindingDB |
RIT | Ki:  32   nM  BindingDB |
RIT | ΔG:  52.25   kJ/mol  BindingDB |
RIT | ΔG:  28.84000015258789   kJ/mol  BindingDB |
RIT | ΔH:  27.59000015258789   kJ/mol  BindingDB |
RIT | -TΔS:  43.08000183105469   kJ/mol  BindingDB |
RIT | Ki:  0.20000000298023224   nM  BindingDB |
RIT | Ki:  0.23000000417232513   nM  BindingDB |
RIT | ΔH:  11.699999809265137   kJ/mol  BindingDB |
RIT | Ki:  3.0999999046325684   nM  BindingDB |
RIT | Ki:  2.809999942779541   nM  BindingDB |
RIT | -TΔS:  76.54000091552734   kJ/mol  BindingDB |
RIT | Ki:  0.9100000262260437   nM  BindingDB |
RIT | ΔG:  54.34000015258789   kJ/mol  BindingDB |
RIT | Ki:  0.46000000834465027   nM  BindingDB |
RIT | EC50:  150   nM  BindingDB |
RIT | ΔG:  50.15999984741211   kJ/mol  BindingDB |
RIT | Ki:  0.5899999737739563   nM  BindingDB |
RIT | ΔG:  38.040000915527344   kJ/mol  BindingDB |
RIT | Ki:  0.3700000047683716   nM  BindingDB |
RIT | IC50:  9850   nM  BindingDB |
RIT | ΔG:  33.439998626708984   kJ/mol  BindingDB |
RIT | ΔH:  21.739999771118164   kJ/mol  BindingDB |
RIT | ΔH:  13.789999961853027   kJ/mol  BindingDB |
RIT | Ki:  0.019999999552965164   nM  BindingDB |
RIT | ΔH:  43.470001220703125   kJ/mol  BindingDB |
RIT | Ki:  0.699999988079071   nM  BindingDB |
RIT | ΔH:  30.510000228881836   kJ/mol  BindingDB |
RIT | Ki:  13   nM  BindingDB |
RIT | ΔH:  35.95000076293945   kJ/mol  BindingDB |
RIT | ΔG:  38.869998931884766   kJ/mol  BindingDB |
RIT | -TΔS:  65.23999786376953   kJ/mol  BindingDB |
RIT | Ki:  2.4000000953674316   nM  BindingDB |
RIT | Kd:  0.6100000143051147   nM  BindingDB |
RIT | ΔG:  53.91999816894531   kJ/mol  BindingDB |
RIT | ΔH:  2.0899999141693115   kJ/mol  BindingDB |
RIT | -TΔS:  30.110000610351562   kJ/mol  BindingDB |
RIT | Ki:  0.699999988079071   nM  BindingDB |
RIT | -TΔS:  65.6500015258789   kJ/mol  BindingDB |
RIT | -TΔS:  45.59000015258789   kJ/mol  BindingDB |
RIT | ΔG:  52.66999816894531   kJ/mol  BindingDB |
RIT | ΔG:  36.779998779296875   kJ/mol  BindingDB |
RIT | ΔG:  34.279998779296875   kJ/mol  BindingDB |
RIT | -TΔS:  46.84000015258789   kJ/mol  BindingDB |
RIT | -TΔS:  102.05999755859375   kJ/mol  BindingDB |
RIT | ΔH:  12.960000038146973   kJ/mol  BindingDB |
RIT | ΔG:  45.560001373291016   kJ/mol  BindingDB |
RIT | Ki:  0.11999999731779099   nM  BindingDB |
RIT | -TΔS:  30.110000610351562   kJ/mol  BindingDB |
RIT | -TΔS:  57.33000183105469   kJ/mol  BindingDB |
RIT | ΔH:  4.599999904632568   kJ/mol  BindingDB |
RIT | ΔG:  49.7400016784668   kJ/mol  BindingDB |
RIT | ΔH:  12.539999961853027   kJ/mol  BindingDB |
RIT | -TΔS:  70.2699966430664   kJ/mol  BindingDB |
RIT | Ki:  0.5   nM  BindingDB |
RIT | -TΔS:  56.86000061035156   kJ/mol  BindingDB |
RIT | Ki:  0.05999999865889549   nM  BindingDB |
RIT | -TΔS:  57.29999923706055   kJ/mol  BindingDB |
RIT | Ki:  0.029999999329447746   nM  BindingDB |
RIT | ΔH:  9.609999656677246   kJ/mol  BindingDB |
RIT | ΔH:  12.119999885559082   kJ/mol  BindingDB |
RIT | ΔH:  2.930000066757202   kJ/mol  BindingDB |
RIT | ΔG:  45.560001373291016   kJ/mol  BindingDB |
RIT | ΔH:  12.960000038146973   kJ/mol  BindingDB |
RIT | -TΔS:  39.29999923706055   kJ/mol  BindingDB |
RIT | -TΔS:  69.83000183105469   kJ/mol  BindingDB |
RIT | -TΔS:  52.68000030517578   kJ/mol  BindingDB |
RIT | ΔG:  55.59000015258789   kJ/mol  BindingDB |
RIT | ΔH:  0.07999999821186066   kJ/mol  BindingDB |
RIT | Ki:  0.15000000596046448   nM  BindingDB |
RIT | ΔH:  17.969999313354492   kJ/mol  BindingDB |
RIT | Ki:  3.0199999809265137   nM  BindingDB |
RIT | Ki:  4.5   nM  BindingDB |
RIT | ΔH:  24.239999771118164   kJ/mol  BindingDB |
RIT | Ki:  4   nM  BindingDB |
RIT | ΔH:  10.869999885559082   kJ/mol  BindingDB |
RIT | -TΔS:  82.80000305175781   kJ/mol  BindingDB |
RIT | ΔH:  8.779999732971191   kJ/mol  BindingDB |
RIT | ΔH:  33.439998626708984   kJ/mol  BindingDB |
RIT | -TΔS:  35.540000915527344   kJ/mol  BindingDB |
RIT | ΔG:  57.27000045776367   kJ/mol  BindingDB |
RIT | ΔH:  3.759999990463257   kJ/mol  BindingDB |
RIT | -TΔS:  43.08000183105469   kJ/mol  BindingDB |
RIT | ΔH:  8.359999656677246   kJ/mol  BindingDB |
RIT | ΔG:  40.54999923706055   kJ/mol  BindingDB |
RIT | ΔH:  9.199999809265137   kJ/mol  BindingDB |
RIT | ΔH:  43.470001220703125   kJ/mol  BindingDB |
Entity ID: 2 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_001001 (RIT) Query on PRD_001001 | A | RITONAVIR | Peptide-like /  Inhibitor | | -- |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 61.414 | α = 90 |
b = 61.414 | β = 90 |
c = 80.816 | γ = 120 |
Software Name | Purpose |
---|---|
CNS | refinement |
SHELX | refinement |
CNS | phasing |