1RFA

NMR SOLUTION STRUCTURE OF THE RAS-BINDING DOMAIN OF C-RAF-1


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Submitted: 30 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Solution structure of the Ras-binding domain of c-Raf-1 and identification of its Ras interaction surface.

Emerson, S.D.Madison, V.S.Palermo, R.E.Waugh, D.S.Scheffler, J.E.Tsao, K.L.Kiefer, S.E.Liu, S.P.Fry, D.C.

(1995) Biochemistry 34: 6911-6918

  • DOI: 10.1021/bi00021a001
  • Primary Citation of Related Structures:  
    1RFA

  • PubMed Abstract: 
  • The structure of the Ras-binding domain of human c-Raf-1 (residues 55-132) has been determined in solution by nuclear magnetic resonance (NMR) spectroscopy. Following complete assignment of the backbone and side-chain 1H, 15N, and 13C resonances, the ...

    The structure of the Ras-binding domain of human c-Raf-1 (residues 55-132) has been determined in solution by nuclear magnetic resonance (NMR) spectroscopy. Following complete assignment of the backbone and side-chain 1H, 15N, and 13C resonances, the structure was calculated using the program CHARMM. Over 1300 NOE-derived constraints were applied, resulting in a detailed structure. The fold of Raf55-132 consists of a five-stranded beta-sheet, a 12-residue alpha-helix, and an additional one-turn helix. It is similar to those of ubiquitin and the IgG-binding domain of protein G, although the three proteins share very little sequence identity. The surface of Raf55-132 that interacts with Ras has been identified by monitoring perturbation of line widths and chemical shifts of 15N-labeled Raf55-132 resonances during titration with unlabeled Ras-GMPPNP. The Ras-binding site is contained within a spatially contiguous patch comprised of the N-terminal beta-hairpin and the C-terminal end of the alpha-helix.


    Related Citations: 
    • Chemical Shift Assignments and Folding Topology of the Ras-Binding Domain of Human Raf-1 as Determined by Heteronuclear Three-Dimensional NMR Spectroscopy
      Emerson, S.D., Waugh, D.S., Scheffler, J.E., Tsao, K.L., Prinzo, K.M., Fry, D.C.
      (1994) Biochemistry 33: 7745
    • Characterization of a 78-Residue Fragment of C-Raf-1 that Comprises a Minimal Binding Domain for the Interaction with Ras-GTP
      Scheffler, J.E., Waugh, D.S., Bekesi, E., Kiefer, S.E., Losardo, J.E., Neri, A., Prinzo, K.M., Tsao, K.L., Wegrzynski, B., Emerson, S.D., al., et
      (1994) J Biol Chem 269: 22340

    Organizational Affiliation

    Roche Research Center, Hoffmann-La Roche Inc., Nutley, New Jersey 07110, USA.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
RAF1A79Homo sapiensMutation(s): 0 
Gene Names: RAF1RAF
EC: 2.7.1 (PDB Primary Data), 2.7.11.1 (UniProt)
Find proteins for P04049 (Homo sapiens)
Explore P04049 
Go to UniProtKB:  P04049
NIH Common Fund Data Resources
PHAROS  P04049
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Submitted: 30 
  • OLDERADO: 1RFA Olderado

Structure Validation

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Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1996-06-20
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance