1R2L | pdb_00001r2l

A parallel stranded DNA duplex with an A-G mismatch base-pair

• PDB DOI: https://doi.org/10.2210/pdb1R2L/pdb
• NAKB: 1R2L
• BMRB: 5979

• Classification: DNA
• Mutation(s): No 


• Deposited: 2003-09-29 Released: 2004-10-12 
• Deposition Author(s): Venkitakrishnan, R.P., Bhaumik, S.R., Chary, K.V.R., govil, G., Liu, K., Howard, F.B., Miles, T.H.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 1 
• Conformers Submitted: 1 
• Selection Criteria: energy minimized using the NMR constraints 

Literature

A parallel stranded DNA duplex with an A-G mismatch base-pair: (CCATAATTTACC:CCTATGAAATCC)

Venkitakrishnan, R.P., Bhaumik, S.R., Chary, K.V.R., govil, G., Liu, K., Howard, F.B., Miles, T.H.

(2004) Recent Trends In Biophys Res : 1-9

Biological Assembly 1  

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 7.19 kDa 
• Atom Count: 482 
• Modeled Residue Count: 24 
• Deposited Residue Count: 24 
• Unique nucleic acid chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Length	Organism	Image
DNA (5'-D(P*(DNR)P*(DNR)P*DAP*DTP*DAP*DAP*DTP*DTP*DTP*DAP*(DNR)P*(DNR))-3')	A	12	N/A

Entity ID: 2
Molecule	Chains	Length	Organism	Image
5'-D(P*CP*CP*TP*AP*TP*GP*AP*AP*AP*TP*CP*C)-3'	B	12	N/A

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 1 
• Conformers Submitted: 1 
• Selection Criteria: energy minimized using the NMR constraints 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-10-12 
Deposition Author(s): Venkitakrishnan, R.P., Bhaumik, S.R., Chary, K.V.R., govil, G., Liu, K., Howard, F.B., Miles, T.H.

Revision History  

• Version 1.0: 2004-10-12
  Type: Initial release
  
• Version 1.1: 2008-04-29
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-02
  Changes: Data collection, Database references, Derived calculations
• Version 1.4: 2024-05-22
  Changes: Data collection