1R1A

CRYSTAL STRUCTURE OF HUMAN RHINOVIRUS SEROTYPE 1A (HRV1A)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structure of human rhinovirus serotype 1A (HRV1A).

Kim, S.S.Smith, T.J.Chapman, M.S.Rossmann, M.G.Pevear, D.C.Dutko, F.J.Felock, P.J.Diana, G.D.McKinlay, M.A.

(1989) J.Mol.Biol. 210: 91-111

  • Also Cited By: 1QJY, 1QJX, 1QJU

  • PubMed Abstract: 
  • The structure of human rhinovirus 1A (HRV1A) has been determined to 3.2 A resolution using phase refinement and extension by symmetry averaging starting with phases at 5 A resolution calculated from the known human rhinovirus 14 (HRV14) structure. Th ...

    The structure of human rhinovirus 1A (HRV1A) has been determined to 3.2 A resolution using phase refinement and extension by symmetry averaging starting with phases at 5 A resolution calculated from the known human rhinovirus 14 (HRV14) structure. The polypeptide backbone structures of HRV1A and HRV14 are similar, but the exposed surfaces are rather different. Differential charge distribution of amino acid residues in the "canyon", the putative receptor binding site, provides a possible explanation for the difference in minor versus major receptor group specificities, represented by HRV1A and HRV14, respectively. The hydrophobic pocket in VP1, into which antiviral compounds bind, is in an "open" conformation similar to that observed in drug-bound HRV14. Drug binding in HRV1A does not induce extensive conformational changes, in contrast to the case of HRV14.


    Related Citations: 
    • Structure of a Human Common Cold Virus and Functional Relationship to Other Picornaviruses
      Rossmann, M.G.,Arnold, E.,Erickson, J.W.,Frankenberger, E.A.,Griffith, J.P.,Hecht, H.-J.,Johnson, J.E.,Kamer, G.,Luo, M.,Mosser, A.G.,Rueckert, R.R.,Sherry, B.,Vriend, G.
      (1985) Nature 317: 145


    Organizational Affiliation

    Department of Biological Sciences, Purdue University, West Lafayette, IN 47907.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP1)
1
287Human rhinovirus 1AMutation(s): 0 
Find proteins for P23008 (Human rhinovirus 1A)
Go to UniProtKB:  P23008
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP2)
2
263Human rhinovirus 1AMutation(s): 0 
Find proteins for P23008 (Human rhinovirus 1A)
Go to UniProtKB:  P23008
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP3)
3
238Human rhinovirus 1AMutation(s): 0 
Find proteins for P23008 (Human rhinovirus 1A)
Go to UniProtKB:  P23008
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
HUMAN RHINOVIRUS 1A COAT PROTEIN (SUBUNIT VP4)
4
44Human rhinovirus 1AMutation(s): 0 
Find proteins for P23008 (Human rhinovirus 1A)
Go to UniProtKB:  P23008
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SUC
Query on SUC

Download SDF File 
Download CCD File 
1
SUCROSE
C12 H22 O11
CZMRCDWAGMRECN-UGDNZRGBSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • Space Group: P 63 2 2
Unit Cell:
Length (Å)Angle (°)
a = 341.300α = 90.00
b = 341.300β = 90.00
c = 465.900γ = 120.00
Software Package:
Software NamePurpose
PROLSQrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1990-07-15
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2011-12-07
    Type: Database references