1QYA

CRYSTAL STRUCTURE OF E. COLI PROTEIN YDDE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.186 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of E. coli yddE protein reveals a striking homology with diaminopimelate epimerase

Grassick, A.Sulzenbacher, G.Roig-Zamboni, V.Campanacci, V.Cambillau, C.Bourne, Y.

(2004) Proteins 55: 764-767


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HYPOTHETICAL PROTEIN yddE
A, B
307Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: yddE
EC: 5.1.-.-
Find proteins for P37757 (Escherichia coli (strain K12))
Go to UniProtKB:  P37757
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.186 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 67.159α = 90.00
b = 79.631β = 115.26
c = 77.022γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
SCALAdata scaling
CCP4data scaling
REFMACrefinement
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2004-06-08
    Type: Initial release
  • Version 1.1: 2008-04-29
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Advisory, Version format compliance