1QUQ | pdb_00001quq

COMPLEX OF REPLICATION PROTEIN A SUBUNITS RPA14 AND RPA32


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 
    0.291 (Depositor), 0.289 (DCC) 
  • R-Value Work: 
    0.212 (Depositor), 0.210 (DCC) 
  • R-Value Observed: 
    0.212 (Depositor) 

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

The crystal structure of the complex of replication protein A subunits RPA32 and RPA14 reveals a mechanism for single-stranded DNA binding.

Bochkarev, A.Bochkareva, E.Frappier, L.Edwards, A.M.

(1999) EMBO J 18: 4498-4504

  • DOI: https://doi.org/10.1093/emboj/18.16.4498
  • Primary Citation Related Structures: 
    1QUQ

  • PubMed Abstract: 

    Replication protein A (RPA), the eukaryote single-stranded DNA-binding protein (SSB), is a heterotrimer. The largest subunit, RPA70, which harbours the major DNA-binding activity, has two DNA-binding domains that each adopt an OB-fold. The complex of the two smaller subunits, RPA32 and RPA14, has weak DNA-binding activity but the mechanism of DNA binding is unknown. We have determined the crystal structure of the proteolytic core of RPA32 and RPA14, which consists of the central two-thirds of RPA32 and the entire RPA14 subunit. The structure revealed that RPA14 and the central part of RPA32 are structural homologues. Each subunit contains a central OB-fold domain, which also resembles the DNA-binding domains in RPA70; an N-terminal extension that interacts with the central OB-fold domain; and a C-terminal helix that mediate heterodimerization via a helix-helix interaction. The OB-fold of RPA32, but not RPA14, possesses additional similarity to the RPA70 DNA-binding domains, supporting a DNA-binding role for RPA32. The discovery of a third and fourth OB-fold in RPA suggests that the quaternary structure of SSBs, which in Bacteria and Archaea are also tetramers of OB-folds, is conserved in evolution. The structure also suggests a mechanism for RPA trimer formation.


  • Organizational Affiliation
    • Department of Medical Genetics and Microbiology, University of Toronto, 1 King's College Circle, Toronto, Ontario M5S 1A8.

Macromolecule Content 

  • Total Structure Weight: 56.03 kDa 
  • Atom Count: 3,786 
  • Modeled Residue Count: 469 
  • Deposited Residue Count: 500 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
PROTEIN (REPLICATION PROTEIN A 32 KD SUBUNIT)
A, C
129Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P15927 (Homo sapiens)
Explore P15927 
Go to UniProtKB:  P15927
PHAROS:  P15927
GTEx:  ENSG00000117748 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP15927
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
PROTEIN (REPLICATION PROTEIN A 14 KD SUBUNIT)
B, D
121Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P35244 (Homo sapiens)
Explore P35244 
Go to UniProtKB:  P35244
PHAROS:  P35244
GTEx:  ENSG00000106399 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP35244
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free:  0.291 (Depositor), 0.289 (DCC) 
  • R-Value Work:  0.212 (Depositor), 0.210 (DCC) 
  • R-Value Observed: 0.212 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 65.7α = 90
b = 76.6β = 90
c = 119.4γ = 90
Software Package:
Software NamePurpose
SnBphasing
PHASESphasing
X-PLORrefinement
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1999-08-13
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Version format compliance
  • Version 1.3: 2017-10-04
    Changes: Refinement description, Structure summary
  • Version 1.4: 2024-02-14
    Changes: Data collection, Database references